RNA id: AMCG00011207


Basic Information

Item Value
RNA id AMCG00011207
length 900
RNA type mRNA
GC content 0.61
exon number 4
gene id AMCG00011207
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13939359 ~ 13946548 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTAGTGAAATTGGCACTAGTCCTGCTGGTTTTCACTGTCGCTGAACAAGTAGTGGGGACGGATAATATTGAGCTTCACGAAAACCCCCAAGAAAAGCCGGCTAACCAGCAGAAGGGGCGCCTTTCTCTGCAAAACACAGCCGAGATCCAGCACTGCTTGGTCAATGCTGGGGACGTGGGCTGCGGCGTGTTTGAGTGCTTCGAGAACAACTCCTGCGAGATCAGAGGATTGCAAGAGATCTGCATGACTTTCCTTCACAATGCAGGGAAGTTCGATTCCCAgGGCAAGTCCTTCATCAAAGACGCCCTCAAGTGCATGGCCCATGGACTGAGGCACCGCTTCAGCTGCATCAGCCGCAAGTGCCCGGCCATCAAGGAGATGGTGTTCCAGCTGCAGAGGGAGTGCTACGTCAAGCACAACCTGTGCTCCGCCGCCAAAGACAACGTCAACGTCATGGTGGAGATGATTCACTTCCAAGATCTGTTTCCGAAAGGGCCCTACGTGGAGCTGGTGAACATCCTGCTGGGCTGcggggaggaggtgagggaggcaCTGATCCGCAGCGTGCGGCAGCAGTGCGAGCAGAACTGGGGCGCCCTGTGTGACAGCCTCAGCTTCTGCCCCCTGGGGCGGCCCGACGAGCACCCCTCCCCCGTCACCCCCCCACCCGAGCGGAGACACGCGGaccccccccaccgccccgGCAACAGAGGAACGCTGGACCCGGCCCAGACGCAGCCCGAGGCCGAGAGGGAGGCCTCCAGGACCTCCAGGCAGGGCGAGAAGGAGAAGGGGGCAAAGGCGCACAGTCGCAGGGGACAGGCTCCGAGGCGCGGCAACAGCGAGGCAGACCGGGCGGAGCAGGAAGAGCCTGAGAACACCGACATCCGGAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131342 lncRNA downstream 71744 13864521 ~ 13867615 (-) True G104998
TU131246 lncRNA downstream 260097 13665795 ~ 13679262 (-) False G104929
TU131241 lncRNA downstream 271643 13662186 ~ 13667716 (-) True G104928
TU131214 lncRNA downstream 384285 13553440 ~ 13555074 (-) True G104921
TU131209 lncRNA downstream 561060 13378057 ~ 13378299 (-) True G104916
TU131407 lncRNA upstream 118793 14065341 ~ 14065908 (-) True G105048
TU131411 lncRNA upstream 123856 14070404 ~ 14070969 (-) True G105052
TU131436 lncRNA upstream 252279 14198827 ~ 14203536 (-) True G105077
TU131442 lncRNA upstream 272407 14218955 ~ 14261910 (-) True G105080
TU131467 lncRNA upstream 473153 14419701 ~ 14420053 (-) True G105105
AMCG00011208 mRNA downstream 16692 13919668 ~ 13922667 (-) True AMCG00011208
AMCG00011203 mRNA downstream 81089 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011198 mRNA downstream 160602 13752553 ~ 13778757 (-) True AMCG00011198
AMCG00011200 mRNA downstream 194134 13743918 ~ 13745225 (-) True AMCG00011200
AMCG00011194 mRNA downstream 251655 13684634 ~ 13687704 (-) True AMCG00011194
AMCG00011211 mRNA upstream 47435 13993983 ~ 13996350 (-) False AMCG00011211
AMCG00011216 mRNA upstream 265077 14211625 ~ 14340740 (-) True AMCG00011216
AMCG00011222 mRNA upstream 518609 14465157 ~ 14467077 (-) True AMCG00011222
AMCG00011223 mRNA upstream 535822 14482370 ~ 14489581 (-) True AMCG00011223
AMCG00011230 mRNA upstream 599523 14546071 ~ 14576028 (-) True AMCG00011230
TU131247 other downstream 260097 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 572285 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 995218 12943141 ~ 12944141 (-) False AMCG00011174
TU131119 other downstream 996277 12942391 ~ 12943082 (-) False AMCG00011174
TU130995 other downstream 1299132 12634856 ~ 12640227 (-) True G104749
TU131382 other upstream 49652 13996200 ~ 13996589 (-) True AMCG00011211
TU131409 other upstream 120667 14067215 ~ 14068561 (-) True G105050
TU131692 other upstream 1423854 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1552986 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 2016790 15963338 ~ 15973872 (-) False AMCG00011259

Expression Profile