RNA id: AMCG00011208


Basic Information

Item Value
RNA id AMCG00011208
length 696
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00011208
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13919668 ~ 13922667 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTCCCAGCCCTCCGACTTCTACCCCCTTTTCTGTGAAGGATATCTTGAACCTGGAGCAAAACCAAGACGAGATGGCCTCACTGGAGATCTCCTCCCGGCTGGACACGGCGCTCTCCTCCGCCTCGTCCTGCATGTTGGCGAGGTTTAAGCAGGAGCCCTATGGCGAGATGCCGCCGGCAGCCTCTCTGTTCAGTGAAGATGTCCCGCAGCCCAAGGCCAGTAGAAACCCCGCTCTTAACTTCACCGCTACCTTTTATGGGAAAAATGTCCTGGAAATGGACATCATCAAAGAAGGGAAGTCAGACGGGAGAACCAAAAGAAAGTGCAAGAGACAGCGGCAGGACCAGACCCTGGAGATGGTGGGCATCGCCCCGCCGAGGCGCATCGCCGTGCCCGTGCTGGTGCGGGACGGCAAGCCCTGTCTAGGGGAGACTCCGGCCTACGGCGGCTCCTACAATGTCGGTATTAACCACTACACCTACAACACCTACCCGGCCTTCTCCAACTACCCCAGCCCGGGCTGCAGCACAAACTATGCCTGCAACTACCCCAGTGCGGCTCTGCAGGGCATCCAGTCCCCCACGGCCAACAGCAACTACGTGAACTTCAGCGTTGGGGACCTGAATAATTCCCAGACGCCCTTTCAGTCCAGTAACGCAGTTTCTTCACTGCATGGCATCAGGGCCTGGTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0060038 cardiac muscle cell proliferation biological_process
GO:0001947 heart looping biological_process
GO:1901210 regulation of cardiac chamber formation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131342 lncRNA downstream 52053 13864521 ~ 13867615 (-) True G104998
TU131246 lncRNA downstream 240406 13665795 ~ 13679262 (-) False G104929
TU131241 lncRNA downstream 251952 13662186 ~ 13667716 (-) True G104928
TU131214 lncRNA downstream 364594 13553440 ~ 13555074 (-) True G104921
TU131209 lncRNA downstream 541369 13378057 ~ 13378299 (-) True G104916
TU131407 lncRNA upstream 142674 14065341 ~ 14065908 (-) True G105048
TU131411 lncRNA upstream 147737 14070404 ~ 14070969 (-) True G105052
TU131436 lncRNA upstream 276160 14198827 ~ 14203536 (-) True G105077
TU131442 lncRNA upstream 296288 14218955 ~ 14261910 (-) True G105080
TU131467 lncRNA upstream 497034 14419701 ~ 14420053 (-) True G105105
AMCG00011203 mRNA downstream 61398 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011198 mRNA downstream 140911 13752553 ~ 13778757 (-) True AMCG00011198
AMCG00011200 mRNA downstream 174443 13743918 ~ 13745225 (-) True AMCG00011200
AMCG00011194 mRNA downstream 231964 13684634 ~ 13687704 (-) True AMCG00011194
AMCG00011188 mRNA downstream 576204 13328493 ~ 13343464 (-) True AMCG00011188
AMCG00011207 mRNA upstream 16692 13939359 ~ 13946548 (-) True AMCG00011207
AMCG00011211 mRNA upstream 71316 13993983 ~ 13996350 (-) False AMCG00011211
AMCG00011216 mRNA upstream 288958 14211625 ~ 14340740 (-) True AMCG00011216
AMCG00011222 mRNA upstream 542490 14465157 ~ 14467077 (-) True AMCG00011222
AMCG00011223 mRNA upstream 559703 14482370 ~ 14489581 (-) True AMCG00011223
TU131247 other downstream 240406 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 552594 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 975527 12943141 ~ 12944141 (-) False AMCG00011174
TU131119 other downstream 976586 12942391 ~ 12943082 (-) False AMCG00011174
TU130995 other downstream 1279441 12634856 ~ 12640227 (-) True G104749
TU131382 other upstream 73533 13996200 ~ 13996589 (-) True AMCG00011211
TU131409 other upstream 144548 14067215 ~ 14068561 (-) True G105050
TU131692 other upstream 1447735 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1576867 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 2040671 15963338 ~ 15973872 (-) False AMCG00011259

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_17562353_17564258.mRNA True 1780 mRNA 0.45 2 CI01000000 17561881 ~ 17564639 (-)