RNA id: AMCG00011216


Basic Information

Item Value
RNA id AMCG00011216
length 1557
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00011216
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14211625 ~ 14340740 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATTTTAACATCACCACAGTCATTGATAGTGATTATGCCGAGAGAGACTCATCAGCTCGAGTCCTGAAAGGCTGTTTCCTGTCCTTGCTCATTCTGTCGACTCTCCTGGGGAACACACTGGTCTGTGTGGCTGTGACCAAGTTCCGTCATCTGCGGTCCAAAGTCACAAACTTCTTCGTGATATCCCTGGCTGTCTCAGACCTGCTGGTGGCAATTTTGGTAATGCCCTGGAAAGCTGTGACCGAAATTGCTGGCTTTTGGCCCTTCGGCTCGTTCTGCAACATTTGGGTGGCCTTTGATATAATGTGCTCCACAGCCTCCATTTTGAACCTGTGCATCATCAGTGTGGACAGATACTGGGCTATATCAAGCCCCTTCAGATATGAGAGGAAGATGACGCCCAAAGTGGCATTCGTTATGATCAGCGTGGCATGGACCCTGTCACTGCTCATCTCTTTCATTCCCGTGCAGCTGAACTGGCACAAGGCTCAAACCGCCAGTCTTTCAGAACTGAACGGCAGCTATGGGCCACTGCTGTCGGACAACTGCGACGCAAGCCTCAACCGGACTTATGCCATCTCGTCCTccctcatcagcttttacattcCTGTTGCCATCATGATCGTCACGTACACTCGGATTTACAGAATCGCCCAGAAGCAGATCAGGAGGATCTCGGCCCTGGAGAGGGCGGCGGAGAGTGCCAAGAACCGTCACAGCAGCATGGGCAACAGCTCCAGCATCGAGTCCGAGAGCTCCTTCAAGATGTCCTTCAAAAGAGAAACCAAAGTTTTAAAAACTCTCTCGGTTATAATGGGGGTCTTCGTATGCTGCTGGCTGCCCTTTTTTATCCTCAACTGCATGGTGCCCTTCTGTGAGCCCACCTCACCCACCAGCAGCGCAGACTTTCCCTGCATAAGCTCCACCACGTTTGATGTCTTTGTCTGGTTTGGATGGACCAACTCTTCACTTAACCCCATCATCTATGCCTTTAACGCAGACTTCCGTAGAGCTTTCTCCATTCTCTTGGGTTGCCACAGACTCTGTCCCATCAGTAATGCCATAGAGACGGTCAGCATCAACAACAATGGGGCCCCGCCACCTTCTTTCCATTACCAGCCAAAGGGGTTCATACCCAAAGAGGGTAATGTGACTTACCTGATTCCTCACTCCATACTCTGCCAAGATGACGAACCACAGAAAACGGATGAGGAAGACATTGGGATTAAGACACTGGAAAAACTATCGCCTGCAGTGTCAGTTAAGATCATGAAAaaTGCCATGTCACTCTCCTACCACCCCCTCCCGCTAATTAGCAGGCAGTATCCTGATGGCCAGATGCCCAGCGACAAGACCATCGGAGGAGGCGATGACTCCTTCAACACCTTCTTCAATGAGACCGGGGCAGGCAAGCACGTCCCCCGGGCTGTCTATGTGGACCAGGGGCCCACTGTCATCAGTAAGCAGGGGCTGCCCATGTTATTAAGGATCCCCCATCAGCGCTACAAACTCTGGGAAGAACTGTATGGGAAACTGCAGGAGCAGGAGTTCTAA

Function

GO:

id name namespace
GO:0042311 vasodilation biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004952 dopamine neurotransmitter receptor activity molecular_function

KEGG:

id description
K04144 DRD1; dopamine receptor D1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131436 lncRNA downstream 8089 14198827 ~ 14203536 (-) True G105077
TU131411 lncRNA downstream 140656 14070404 ~ 14070969 (-) True G105052
TU131407 lncRNA downstream 145717 14065341 ~ 14065908 (-) True G105048
TU131342 lncRNA downstream 344010 13864521 ~ 13867615 (-) True G104998
TU131246 lncRNA downstream 532363 13665795 ~ 13679262 (-) False G104929
TU131467 lncRNA upstream 78961 14419701 ~ 14420053 (-) True G105105
TU131470 lncRNA upstream 86679 14427419 ~ 14434667 (-) True G105107
TU131475 lncRNA upstream 106598 14447338 ~ 14449781 (-) True G105112
TU131557 lncRNA upstream 548486 14889226 ~ 14889437 (-) True G105176
TU131570 lncRNA upstream 588061 14928801 ~ 14929049 (-) True G105187
AMCG00011211 mRNA downstream 215275 13993983 ~ 13996350 (-) False AMCG00011211
AMCG00011207 mRNA downstream 265077 13939359 ~ 13946548 (-) True AMCG00011207
AMCG00011208 mRNA downstream 288958 13919668 ~ 13922667 (-) True AMCG00011208
AMCG00011203 mRNA downstream 353355 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011198 mRNA downstream 432868 13752553 ~ 13778757 (-) True AMCG00011198
AMCG00011222 mRNA upstream 124417 14465157 ~ 14467077 (-) True AMCG00011222
AMCG00011223 mRNA upstream 141630 14482370 ~ 14489581 (-) True AMCG00011223
AMCG00011230 mRNA upstream 205331 14546071 ~ 14576028 (-) True AMCG00011230
AMCG00011231 mRNA upstream 308638 14649378 ~ 14676424 (-) True AMCG00011231
AMCG00011229 mRNA upstream 347439 14688179 ~ 14701429 (-) True AMCG00011229
TU131409 other downstream 143064 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 215036 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 532363 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 844551 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 1267484 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 1029662 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1158794 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 1622598 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 1622712 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 2617441 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_17696710_17697801.mRNA True 1785 mRNA 0.47 1 CI01000000 17696280 ~ 17698064 (-)