RNA id: AMCG00011222


Basic Information

Item Value
RNA id AMCG00011222
length 471
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00011222
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14465157 ~ 14467077 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGAGCTGTTTCAGCCCTTCGTGGGAACACACCCAGGGTACTCCTTCGCAGTGGACTGGTGGTCTTTGGGAATCACTGCATATGAGCTCCTGAGGGGACAGAGACCATACATCATGAGATCCAGCACACCTGCAAATGAGATCCTACAGGCCTTTCACAGCCACAATATCAACTACCCAGCAGCATGGTCTGAAGAGATCAAGTCTCTCCTGAGAAAGTTGCTGTGCATCGAGGCAGAGAACAGGATCTCTTGTCTGTCAGAGCTGCAGGACTTGGCCTACCTATGTGATGTGAATTGGGACGCAGTGCTACAGAAAGCAATACCTCCAGGGTTCCTTCCCAATAAACGGCGACTGAACTGCGACCCAACGTTTGAGCTGGAGGAAATGATTCTGGAGTCCAAGCCACTCCACAAGAAGAAGAAGCGACTGGCGAggaaaatgaaggaaaacagtACGGACAGCTCCCCT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131475 lncRNA downstream 15376 14447338 ~ 14449781 (-) True G105112
TU131470 lncRNA downstream 30490 14427419 ~ 14434667 (-) True G105107
TU131467 lncRNA downstream 45104 14419701 ~ 14420053 (-) True G105105
TU131442 lncRNA downstream 203247 14218955 ~ 14261910 (-) True G105080
TU131436 lncRNA downstream 261621 14198827 ~ 14203536 (-) True G105077
TU131557 lncRNA upstream 422149 14889226 ~ 14889437 (-) True G105176
TU131570 lncRNA upstream 461724 14928801 ~ 14929049 (-) True G105187
TU131596 lncRNA upstream 587339 15054416 ~ 15054817 (-) True G105213
TU131604 lncRNA upstream 652130 15119207 ~ 15119433 (-) True G105221
TU131635 lncRNA upstream 766626 15233703 ~ 15300851 (-) True G105249
AMCG00011216 mRNA downstream 124417 14211625 ~ 14340740 (-) True AMCG00011216
AMCG00011211 mRNA downstream 468807 13993983 ~ 13996350 (-) False AMCG00011211
AMCG00011207 mRNA downstream 518609 13939359 ~ 13946548 (-) True AMCG00011207
AMCG00011208 mRNA downstream 542490 13919668 ~ 13922667 (-) True AMCG00011208
AMCG00011203 mRNA downstream 606887 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011223 mRNA upstream 15293 14482370 ~ 14489581 (-) True AMCG00011223
AMCG00011230 mRNA upstream 78994 14546071 ~ 14576028 (-) True AMCG00011230
AMCG00011231 mRNA upstream 182301 14649378 ~ 14676424 (-) True AMCG00011231
AMCG00011229 mRNA upstream 221102 14688179 ~ 14701429 (-) True AMCG00011229
AMCG00011232 mRNA upstream 356447 14823524 ~ 14833642 (-) True AMCG00011232
TU131409 other downstream 396596 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 468568 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 785895 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 1098083 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 1521016 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 903325 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1032457 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 1496261 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 1496375 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 2491104 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile