RNA id: AMCG00011223


Basic Information

Item Value
RNA id AMCG00011223
length 324
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00011223
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14482370 ~ 14489581 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTGCATCGTACagaaaaaagacacaaagaaaatgtatgccATGAAGTATATGaacaaattgaaatgtgtgGAGCGCAACGAAGTCAGAAACGTCTTCAAAGAACTGCAGATAATGCAGAATTTGGAGCACCCCTTCTTGGTGAACTTTTGGTACTCCTTCCAGGATGAGGAGGACATGTTCATGGTGGTGGATCTTCTGCTGGGGGGTGACCTGCGGTATCACCTGCAGCAGAACGTACACTTCTCCGAGAGCACTGTCAAGCTGTACGTCTGTGAGGTGGCCCTGGCCCTGGGCTACCTACGGAGTAAACACATCATTCAC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131475 lncRNA downstream 32589 14447338 ~ 14449781 (-) True G105112
TU131470 lncRNA downstream 47703 14427419 ~ 14434667 (-) True G105107
TU131467 lncRNA downstream 62317 14419701 ~ 14420053 (-) True G105105
TU131442 lncRNA downstream 220460 14218955 ~ 14261910 (-) True G105080
TU131436 lncRNA downstream 278834 14198827 ~ 14203536 (-) True G105077
TU131557 lncRNA upstream 399645 14889226 ~ 14889437 (-) True G105176
TU131570 lncRNA upstream 439220 14928801 ~ 14929049 (-) True G105187
TU131596 lncRNA upstream 564835 15054416 ~ 15054817 (-) True G105213
TU131604 lncRNA upstream 629626 15119207 ~ 15119433 (-) True G105221
TU131635 lncRNA upstream 744122 15233703 ~ 15300851 (-) True G105249
AMCG00011222 mRNA downstream 15293 14465157 ~ 14467077 (-) True AMCG00011222
AMCG00011216 mRNA downstream 141630 14211625 ~ 14340740 (-) True AMCG00011216
AMCG00011211 mRNA downstream 486020 13993983 ~ 13996350 (-) False AMCG00011211
AMCG00011207 mRNA downstream 535822 13939359 ~ 13946548 (-) True AMCG00011207
AMCG00011208 mRNA downstream 559703 13919668 ~ 13922667 (-) True AMCG00011208
AMCG00011230 mRNA upstream 56490 14546071 ~ 14576028 (-) True AMCG00011230
AMCG00011231 mRNA upstream 159797 14649378 ~ 14676424 (-) True AMCG00011231
AMCG00011229 mRNA upstream 198598 14688179 ~ 14701429 (-) True AMCG00011229
AMCG00011232 mRNA upstream 333943 14823524 ~ 14833642 (-) True AMCG00011232
AMCG00011233 mRNA upstream 394853 14884434 ~ 14890305 (-) True AMCG00011233
TU131409 other downstream 413809 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 485781 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 803108 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 1115296 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 1538229 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 880821 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1009953 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 1473757 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 1473871 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 2468600 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000040_00643738_00689792.mRNA True 1628 mRNA 0.48 14 CI01000040 643738 ~ 689918 (+)