Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00011227 |
| length | 654 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 5 |
| gene id | AMCG00011227 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030133.1 |
| NCBI id | CM030133.1 |
| chromosome length | 32682731 |
| location | 15015795 ~ 15023060 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0007214 | gamma-aminobutyric acid signaling pathway | biological_process |
| GO:0006821 | chloride transport | biological_process |
| GO:0045202 | synapse | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004890 | GABA-A receptor activity | molecular_function |
| GO:0005230 | extracellular ligand-gated ion channel activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU131569 | lncRNA | upstream | 86855 | 14928643 ~ 14928940 (+) | True | G105186 |
| TU131520 | lncRNA | upstream | 344246 | 14671298 ~ 14671549 (+) | True | G105145 |
| TU131519 | lncRNA | upstream | 344867 | 14670719 ~ 14670928 (+) | True | G105144 |
| TU131518 | lncRNA | upstream | 350642 | 14664620 ~ 14665153 (+) | True | G105143 |
| TU131476 | lncRNA | upstream | 556777 | 14456102 ~ 14459018 (+) | True | G105113 |
| TU131609 | lncRNA | downstream | 226678 | 15249738 ~ 15256622 (+) | True | G105226 |
| TU131624 | lncRNA | downstream | 257395 | 15280455 ~ 15283748 (+) | True | G105238 |
| TU131713 | lncRNA | downstream | 449199 | 15472259 ~ 15487372 (+) | True | AMCG00011250 |
| TU131789 | lncRNA | downstream | 798248 | 15821308 ~ 15839105 (+) | True | G105365 |
| TU131797 | lncRNA | downstream | 836698 | 15859758 ~ 15861690 (+) | True | G105370 |
| AMCG00011225 | mRNA | upstream | 52356 | 14941761 ~ 14963439 (+) | True | AMCG00011225 |
| AMCG00011226 | mRNA | upstream | 109189 | 14896196 ~ 14906606 (+) | True | AMCG00011226 |
| AMCG00011224 | mRNA | upstream | 407212 | 14598190 ~ 14608583 (+) | True | AMCG00011224 |
| AMCG00011221 | mRNA | upstream | 476936 | 14502980 ~ 14538859 (+) | True | AMCG00011221 |
| AMCG00011218 | mRNA | upstream | 566118 | 14427479 ~ 14449677 (+) | True | AMCG00011218 |
| AMCG00011228 | mRNA | downstream | 10879 | 15033939 ~ 15041745 (+) | True | AMCG00011228 |
| AMCG00011234 | mRNA | downstream | 208387 | 15231447 ~ 15233722 (+) | True | AMCG00011234 |
| AMCG00011235 | mRNA | downstream | 219179 | 15242239 ~ 15249288 (+) | True | AMCG00011235 |
| AMCG00011236 | mRNA | downstream | 250839 | 15273899 ~ 15279561 (+) | True | AMCG00011236 |
| AMCG00011240 | mRNA | downstream | 291822 | 15314882 ~ 15317703 (+) | True | AMCG00011240 |
| TU131514 | other | upstream | 395261 | 14619690 ~ 14620534 (+) | True | G105139 |
| TU131073 | other | upstream | 2072713 | 12942380 ~ 12943082 (+) | True | G104815 |
| TU130962 | other | upstream | 2396740 | 12610129 ~ 12619055 (+) | True | G104719 |
| TU130924 | other | upstream | 2488764 | 12525360 ~ 12527031 (+) | True | G104694 |
| TU130727 | other | upstream | 2948458 | 12066494 ~ 12067337 (+) | True | G104550 |
| TU131632 | other | downstream | 297720 | 15320780 ~ 15322425 (+) | False | AMCG00011241 |
| TU131792 | other | downstream | 827586 | 15850646 ~ 15852389 (+) | True | AMCG00011253 |
| TU131793 | other | downstream | 830704 | 15853764 ~ 15855784 (+) | True | AMCG00011252 |
| TU131803 | other | downstream | 940280 | 15963340 ~ 15984079 (+) | True | G105373 |
| TU132132 | other | downstream | 1955432 | 16978492 ~ 16982241 (+) | True | AMCG00011293 |
