RNA id: AMCG00011230


Basic Information

Item Value
RNA id AMCG00011230
length 5944
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00011230
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14546071 ~ 14576028 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCACACATGAGGTCACCTATGTAATGTCAGTGCTGTGGTGCTCACCTGTGACTCTTTTTCAATTATCTTTTCAGATGGAGCTTCTGGATAAGTTCCCAGTGGAAGGGGGACAGAAGGACCCAAAGCAGCGGATCATCCCCTTTCTTCCAGGAAAGATCCTTTTCAGAAGAAGCCACATCAGGGATGTGGCAATGAAACGTCTGAGACCAATTAACGAATACTGTGGGgcTCTTATCCAGCTGCCAGTATACATTTCACAGTGCGAGGAGGTCCGTTTGTTCTTCGAAACTAGACCTGAAGACCTAAACCCACCTAAAGAGGAACCAATTGGGAAGAAGAAATCGGCAGGAGACTTTACCTCCGCAGACCCCCTGCTTTTAGATCAGTACGTGGCTGTCACGGACTACGAGAAACAGGAGAGCTCCGAGATCAGCTTACATGTGGGACAGGTGGTGGAGGTCATCGAGAAGAACGAGTCTGGCTGGTGGTTTGTCAGCTCCGATGACGCACAGGGTTGGGTCCCAGCGACCTGTCTGGAAGCGCAGGACGACCCTGATGACTTCTCCCTTCCAGCTGAGGAAGAGGAGAAGTACACAGTCATCTACCCCTACGCAGCCAGGGATAAAGATGAGATCAGTTTGGAGAGGGGCGGGACGGTCGAGGTCATCCAGAAGAACCTGGAGGGCTGGTGGAAAATCAGGTACCAAGGACAGGAAGGCTGGGCCCCTGCGTCGTACCTGAAGAAGGCTGATATTTTGTCTCAGAAACTGGCTGCCGGGGCAGCGGGCCACTCCAGCTCCACAGATCTCGATGGCTTCTCCAAACAGCAGAATGCCGCCAAGGAGAGTCGCTTCTCGCCCTTCCCGGACACGAAGCGCAAGTCTTCTGATATGAGGCAGAGGCCCCCCCCACGCCGAGACCTCACCATCCCCCGGGGACTGAACCTGCCCAAGCCACCTACTCCCCCTCAAGTGGAAGAGGAGTACTACACCATCGCCGATTTCCAGACCACCATCCCCGATGGCATCAGCTTCCAGGCTGGGATGAAAGTGGAGGTGATCGAGAAGAACTCCAGTGGTTGGTGGTACATTCAGATAGACGAGAAAGAAGGCTGGGCTCCAGTCACATTCATagacaaatacaagaaaaccaGCAGTGCATCCAGGCCAAACTTTTTGGCACCTCTGCCTCATGAAATGGCCCAGCTCAGGATGGAAGATGGTGCCACGGGCAGTTCGGGCCCGGAAGATGCCCCTCGGCCCCCCAGACCTCTGCCGGATGAGCCTCCCACGAGTAGCGACACTGCGGCTCGGCCCAAGCTGAAGGACTGGAAGGTGAAGGACGCAGGGAAGAACATCTCCTTTGACAATAAGGCCTTTGTCCCGAACTCCTTTTCAGGGCCTCTACCTCCTGAACCATCTTGCCCCTCCGCTGAAGAAAAGCCTGCTTTGCCACCGAGGAGAGAATCCATTAACAAGAGCTTAGAGACCGATACTTCAGAGAAACCAAGGCTCGACATGTCCAAAGGCCTGCCTCCAAAGCCGCCCGCCCCCGGGGTGATTCTGCCCCTCATCCCACCCAAGGCAGCTCCCTTCAAGCCAGACAAGAGCCCTGAGCCgaaaaaagaggagaagaaCAAAGTTCTACACCTCCGGAACGAGATGGGCCTGGAGTGCGGACACAAGATCTCCGCCAAAGAGGTGAAAAAGTTCAACCTGAAGCCCATTGCTAAGCCTGGCAAGGTCAAGCCAGAGCCCAGCGAAGACAAACCTGAAGCTGCCAGTCAGGGGCTGTTTGTTAAGCCCAAACCTCTGGTTCGACCCAAACCCACCCCTGCACCCAGAGTCGAGGCCCAGAGTGAAAGCAAGGTCGACATCACCAATCTGAGGAGCCGGCTGCGCCCGTCCAAAGCAGGAGACAATGGTGTGGCAAACGAAGGATTTCAGCATGAGGCCCTGAACAATGGCAAGGGCAGCGAGGATCAGAGAGTGCCACCCAAGCAGCAAAATGGCCACGGCCAGTGTGAAGCAGAGAATGCGAAACCTCCCGCGTCTGCTCCGAAAGATTCCCCACTGAGGCCCGCTGTGCCACCGAGAAGACCTCCCCCTCCGAAAAAGGGCTCCGGTCCTTCCAGCCCAACAGAAACTAAAGCCCCGCTGAAGGAGCTGCCAGAGCATAAACCCCCCCCTCTACAGAACCGGCCCGTTCCCCCCAAACCCAAGGCTCTGGTGCCGCCGCCTGCCAAGGAGGAACCCAAACCCAAAGCAGCTCCAGGACCAAAGCCCTTCAACAAGATGGAGAAACCTGAGCCGCCCAAAGAGAAGCTGCCCCCTCTGATCAAGGACGGCGTGTCCAAGCAGGAGTTTTATATCGCCATCGCAGACTTCGAAGGGGACGACCAGACCGCGGGGTTTAAAGAGGGGGCCGTGTTTGAGGTGCTGGAGAAGAACAGCAGTGGCTGGTGGTTTTGTAAGGATGTTAACAACGGTCCGATGCCAGAGGGCTGGATCCCTTCCAATTATTTGGCGAAGAAACAATAGATATCGAACACAAGgctattttactttatatttaattagcttttttaatttaaaggtgGTACCTTAATAGTGGCATTTTATTACATTCCATTTGTTTCAAGTTTGCAGGAAACCGCATGTGTTAGCAAAAGTGCAAAGAAACAGCCCTATAAGCAGGCTTTATTGGATcctgttttctgtaaataagtGTTACTTAGAACTGGAGAAGTTATTCCAGTTGCCGTATACAACCCGTGGTCctatcaaaacaattaaagctcttgtttttcaccttttgtgCCATACATTACTCAAGGCTATTACataattttttaatatgtagTAACAAGCTAAATTAGACCAATATATATACGTCTGTCGTCTCATGTCGTCCAAGCTATCTCCTCTCAGATTAACGTTCAAATGCTCTGAGCTCAAATATATGCATAGAAGCAAAGTTATCCACATAAGTGTATACtagttttaaataataccaAATGGTGGGTAGAGATTTGACAGCCGAGTGGAACACAAAGCTGTAAAGCAAGGCAATGAGAGGGACTTTCCAACCGGCACTGCCAACTCAGTGCAGAGGCTGTGCAATAGAGCAGTATTTTTCAACCAGTGTGCCACGGCACATTGGTGTCCCATCGGGCAGGCATGCCACAGTATTTTTGGACACGCGAAAGTCACAcgtaagaaaaactaaattaataatataataaacgTTATGCAAGAATTTTAACGTTTGTACCAGAAACAAATGAGTTTGTGTTGAAGACAAGCTGAGGTTTCTCACTGAAatgtgggttttattttcaagggGAGAGTGGGCAGGAGGGGCTGGTGTGCCACGCAAAATTGTAGTAGGTAGTAGGTGTGCCTTGAGCTGTCAGGGGTTGGGAAACGCTGCACCATTGTGCACTTTTCAATGCATCTGTCAACAGTTCAGGGTTCATTCACTGTGACCTTCTCTTAAGATGTGAAGTATGCTATTAAACAGTATACTGTATTTAGCTGTAACAACAAGTTGTTTAACTGCTATTTTGCAAGGCTAGTTTGCAGTGAGacctctttaaaataaccaaacaaaaacctCTTAACTCTATGGATAATTACATGCatacttgatttttttttcttccattcttcAGTTATATAGCCTCCTTCCCTTTGATCAGTCACGTGTTGATATTAATGAGAAAATTGCTGTTTAACAAATCTACCCTGCTCTAATCGTCATCTTCTGTGTGATAGAAAATAGAAACAGgatatttttgcatttggttTATTAATTGCATCCTAGTGCCATCTGTGTTAGCTGCAATTAAAGATAATCCCCCACATTATATTGTAGATATGTGTCTTAACCATCTATGTGTATAACACTAAAAAGTCAGTAAGTACACTGTTTGTTAACAAGGTGCTTTAATCTTCTTTGTATGatgcaatattttaatgtttctatttGTTTCGGGTTTTTGTAACACTAATATTGCTTGACTGGTTTCAAGCATTCGATTTAGTAAACACTtcgtttatttttcttttttatttacattttttctttaaaataactaatttagttgttttctttagaTTCGTTCATCCTATTACCTCAAGTTGAGCCGTAATATTGGGAAGGAAGGTATTCATTTTGCAGAAAAATAGACCGGTAAAAGCCTCTGTTTAAAGAAAGACAAGGAGACAATGGTATTAGATGTTATAGACGCTGTAATATGACATTCACTGACAAGGCCAGGAGCCCAGTGGCTGATGAGTTTCACGAGTATTCAAACACATGGTTTCCACTGGCTGCTTCTGCTCACAAAGGAACAGTTCTCTTTCAGCGGCTCGATCATTTCATTGCATTGCAAGTGCTTCGTTGTCTTTGAAAATGCTGTACTGAATATCCACCCTGTACACCAGCTGGGTTCGTGACAGAGATTTGTTCAGGAGTTCCTAATTGGTATTATGTAGTAAAATCCAGctttttcctttgattttactgcaaaaaaataaaaaaataaaatatttcagatcATATTTTAGGACTTAAAACAACCCTTCTTTTTAGGGTCTCTTTATCTGGTATGAAATCAATCAAAAATCAATAATGgggagacttttttttcccttttagtATGATTGTTAACTGCTTAAACCAAAATAAGTGCTGGTTTACCAGCTGATTTCAAAGAAAAGTTACTGCATTcaaaagatgatgatgatgatgataatacatCTTCATTTAGCATGTTATAGGTGTAACCACTATCTGATTGGATATAGTACTCCACACTGTGTAACAGAGGCTCTAATTAAATCTTGAATCTGCTGAAACCTCAATGGCTCTCTGAATGCAGAGGCCCGTGGCACTGGATTTCCAATGCAAGATGCATTTCTGTAAGGTTTTACCATTTCATGTCATGTTTCAAGCTGGACAgtcctgtattttctgttttgaagtcACTGAATGGAATTAAGTCCACGATTTGCTGGTATTTTAGGGCATTCGAAATGGATTGGTAAAAGGTCTGTGGAAATGAATGCAACTGCTTTTACTTCTAGAAAACGGCTGTAATGGATAACTAGTGAATGGTAGGGATGTGAGCCAGGAAAATAACAAATTCTATCTTCTAATGTTGTGTAGAAAAAGCTTACGTGATGCTACAGAGTTTTTGGTTTGCTACAAGAGAAGAAGCACGGATCATAGCTGGGATCTCCAGTTCCGTACTGAGCCTACAGTCACCTGAATACTCTCACAGGTCGTCAGCGCCACGTACACACTGGTTTAGACCAAAGAGCTACGCAATTGAAATCGTACTCgctttttagtatttatttgaatgaataaatacacaagttCAAAGTGTATGTTGTGGCGAGATGAGATGCTGATAACTGAGCTTATTCCTTAGTTATGCAAAAGATGCTGCATACTTTTCGGAGATGCTGTATATCAAACTCGCTACAGGATGTCTTCGTGTAAATGAGCATATATATGCAAATCTGTGTAATGCAATAGAAGTAATTATATGTTTGTCGGAATACCTCCTGCTCTGCAGTTAGAGCAAAGTACAGATAATAAGACGGTTACATTTTTAGCATTGTTAGATTCCCAATGAAACAGTACAGTGTGTCCTATTATAATGAATGTTTCACTTTATTCAGTGAATTAATTACACATTCCTAGTTACTTTGCCTTCACACAAATGCCTTACTAGAAAAGCCATTTATCTCAAATGATTGAATTTTAAGTGCTGTGCCTTCAAAGCATTGTGTGCTAATAATTGaagctggttttgttttgtgattttattccccctcccccctgatGTGTAGTACTGTAACTGAAGTCATTTATTGTTCAGACTATGATTTCACCTTACACCTGCTCTTTTTTGTggctatttttttt

Function

GO: NA

KEGG:

id description
K24032 SH3PXD2; SH3 and PX domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131475 lncRNA downstream 96290 14447338 ~ 14449781 (-) True G105112
TU131470 lncRNA downstream 111404 14427419 ~ 14434667 (-) True G105107
TU131467 lncRNA downstream 126018 14419701 ~ 14420053 (-) True G105105
TU131442 lncRNA downstream 284161 14218955 ~ 14261910 (-) True G105080
TU131436 lncRNA downstream 342535 14198827 ~ 14203536 (-) True G105077
TU131557 lncRNA upstream 313198 14889226 ~ 14889437 (-) True G105176
TU131570 lncRNA upstream 352773 14928801 ~ 14929049 (-) True G105187
TU131596 lncRNA upstream 478388 15054416 ~ 15054817 (-) True G105213
TU131604 lncRNA upstream 543179 15119207 ~ 15119433 (-) True G105221
TU131635 lncRNA upstream 657675 15233703 ~ 15300851 (-) True G105249
AMCG00011223 mRNA downstream 56490 14482370 ~ 14489581 (-) True AMCG00011223
AMCG00011222 mRNA downstream 78994 14465157 ~ 14467077 (-) True AMCG00011222
AMCG00011216 mRNA downstream 205331 14211625 ~ 14340740 (-) True AMCG00011216
AMCG00011211 mRNA downstream 549721 13993983 ~ 13996350 (-) False AMCG00011211
AMCG00011207 mRNA downstream 599523 13939359 ~ 13946548 (-) True AMCG00011207
AMCG00011231 mRNA upstream 73350 14649378 ~ 14676424 (-) True AMCG00011231
AMCG00011229 mRNA upstream 112151 14688179 ~ 14701429 (-) True AMCG00011229
AMCG00011232 mRNA upstream 247496 14823524 ~ 14833642 (-) True AMCG00011232
AMCG00011233 mRNA upstream 308406 14884434 ~ 14890305 (-) True AMCG00011233
AMCG00011239 mRNA upstream 504356 15080384 ~ 15130043 (-) True AMCG00011239
TU131409 other downstream 477510 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 549482 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 866809 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 1178997 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 1601930 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 794374 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 923506 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 1387310 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 1387424 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 2382153 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037945 False 4561 mRNA 0.46 13 NC_007132.7 42717429 ~ 42780082 (+)