RNA id: AMCG00011231


Basic Information

Item Value
RNA id AMCG00011231
length 3531
RNA type mRNA
GC content 0.48
exon number 17
gene id AMCG00011231
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14649378 ~ 14676424 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caGTATCCTGGTCAGCAGAAAATTGGTTTTGGCAAAGAGAACCTGCTGTTACGGGGGTGCACTGTGCGGAACTCGGAGGATGCTACCGGAATAGTGGTCTATGCCGGGCATGAGACCAAGGCTATGCTGAATAACAGCGGTGCCAGGTACAAGCGCAGCAAGCTGGAGCGAAGGATGAACATCGATGTGCTCTGCAGCATTGGACTTCTCTTTGTGATGTGTCTTATAGGAGCAGTGGGTCATGGGGTTTGGATGAACAGCTTTGCCACCCCACCTCCATTCGAGATTCCAGACAAAGATGGACAATACATTTCTCCATCTTGGGCAGGATTCTATATGTTCTTCACCATGATCATTTTGTTACAAGTGTTGATTCCTATCTCTCTGTACGTGTCCATCGAAATTGTGAAAATGGGTCAGATCTTTTTCATCAGCAATGATCTTGACCTTTACGATGAGGAGACGGACAGACGCCTGGAATGCCGGGCTCTGAACATAACCGAGGACCTTGGGCAAATCCAGTACGTGTTCTCAGACAAGACAGGAACACTTACCGAGAACAAAATGGTTTTCCGCCGCTGCTCTATCTTGGGCACAGAGTTCTCTCATCAAGAAAACGCAATACGGCTTGTGGCCTGTGGAGGGTTGGATTCGGACGAGGAAGACATGGTTTTCGCTCAGAAAGACTGCAAGCCTCGTCTCAGATCTAACCAAGAAGGGCGGAGCACTAAGTGCGCCAGGAAGCGGCAGAGTGCTAGGCCATGTACCGGTGCTCAAGGCAGGAAAAAGTTGGTACCACGTGTGGACAATGAAGTGGCTTTCAGCAGCCCTCTAGAAACAGATGTGATTCCTGATAGGAAGTTGCTGAAGACAGTGCAAGAGACAGCCTGCCAGGTGGAGGCATGGTGCAGAGACAGGCACGGCTCTGACAGCACCTCCTACGCTGACTTCTTCCTTGCTCTGGCCATCTGTAACACGGTGGTGGTTTCCACAGCAACCGTATCGAGACGGAGGCTGATGGGACCTGTCCAGCAAAAGTCATCCTTGAAATCCATTGGCAGACTGCATAGCAtcctgaaaaaaatgaaaccagaacGTCTGATCGAATTCATGACCTCCTTCCAGTCCATTACCGAGAAAACCTCAGTTAGTCCATTGAGTACCGGAGCCTCCACGAGCAACGACCACGGCGCTGAGGATGGGATCTCCAGCAGCTACAAAGACAGCAGCTCGACCAGCAGTGAGGACAACAAGTGCGACGTAGATGACAAAAGCCAGCCTGCAGAACCAAACCCGGACCGCCTGTGCTACGAGGCAGAGAGTCCGGATGAAGCAGCCTTGGTCTACGCTGCAAAGGCCTATGGTTTCACCTTGCTGTCCCGCACTACAGATCAGGTGACTGTGAAGCTGCCACAAGGCAACATCCTTACCTTCGAGGTCCTGCACACGCTGCCTTTCGACTCCAACAGAAAGATGATGTCTGTGCTGGTCAGGCACCCAGTCACCAAGGAGGTGATCGTCTACACCAAAGGTGCAGACTCGGTCATTATGGATGTGCTGGAGAGCCCATTAGGAGagaataaaatgaaaaaaatagctGCTGATACACAAATGCACCTCAACGCATATGCCAAAGAAGGATTACGCACTCTGTGCATCGCTAAAAAGGTTCTGAATGAGGAAGCTTATGAAGACTGGTCAAATAATAGACTTGAAGCCCAGGCTGCAATCAACAGCAGAGATGAATTGCTAATGGACATGGCACTCCAACTGGAGACCAACCTTACGTTGCTTGGGGCCACTGGTATTGAGGATAGGCTTCAAGATGGCGTGCCGGAGACCATTCAAGCTCTTCGAGAGGCTGGCATACAGATTTGGGTGTTGACAGGAGATAAACAGGAGACTGCAGTTAACATTGCCTATTCCTGTAAACTAATGAGTCAACAGGACCAAGTGCTCATGATCAACACTGACAGCAAGgaaGCCTGTGAGTTCATCCTGGATTGCAACCTAGAAGAGGTGAAAAAGTATGATCCTCTCAACCAGTCTCAGATCTTTAAAGTAGATGTGGATTTAGTCCGGCCTGCAACTGACCATCGGCCCACCTTCAGCCTGGTGATTGACGGCAGGACGCTGAGCTTTGTGTTTGATACGAAGCTGCATATGAAGTTCCTGGAGCTGGCCAAGCGCTGCCGGTCAGTGCTGTGCTGCCGAGCCACTCCGCTGCAGAAGAGCACCGTGGTCAGCCTGGTGCAGAGCAATCTAAAGGTCCTGACCCTCTCAATAGGTGATGGTGCTAATGATGTCGACATGATTCAAGCTGCTGATGTTGGAATAGGAATTTCAGGACAGGAAGGAATGCAGGCTGTAATGGCTAGTGATTTTGCCATTTCCCATTTTAAGCACCTAAATAAGCTGCTCTTGGTTCACGGCCATTGGTGCTACACCAGGTTGGCCAACATGGGTATCTATTTCTTCTACAAGAATGTGGCATATGTGAATCTCTTATTCTGGTACCAGTTCTACTGTGGGTTTTCAGGAACTACCATGATTGATTACTGGCTGTTGATTTTCTTCAACCTGCTCTTCACCTCGGTGCCCCCCATCATTTTCGGTATTATGGAGAAAGACATCTCTGCTGAAACACTGCTGGGTTTACCAGTGCTCTACAAGAGTGGCCAAAACTCAGAGACATACAGAGATTCTGATATTGACATCTTTTACTTTGGAACCCCCGTGAACactgtttcattatttgttatCATTTTACATCTGtccattgaaataaaaaactgGGTAAGtattattgctttcaatttccacttgcttttccttttgttgatagctcaatttttttatttgtttgcttgtttttctctgtgtgccATAATTCATACCGTGGTTCACTGGGTTACGATGATTGGCAGTGTTATGCTTTATTTCATTGTGACTCTAGCCTTCAGTGCCATTTGTGTTACCTGTAACCCACCTTCTGACCCCTACTGGATCATGGAAGCACAAATGGCTGATCCAGTTTTCTACCTTGTTTGTATCATAACCACCGTAATTGCGCTGCTGCCAAGATACCTGGTCCGTGCTGTACAAGGTACCTTTGCCTTCTCGCCTCTTGTCAGAGCTCGCCAGCTAGACCAGCTAAGCCAAACAGAAAGGGAGAAGATGATCAGACAATGGAGGGATCATGACCAGTTAATATCTTCCCTCCCTCCACCTCTTGATTTCCCGATTCCTTCTCCAACAATTCCAGCTTTGCCAGTTTATAGCAGTTCTCGTCTACCAGAAGCCAGTGTGGTCTCTCCATGGAGTGATGCTTCAGTTAGCAAGACAGCTCCATGCAATGGGATGTCTAATGGAACAGAGGCTGATCCTGACAACAAAGGAGATTTCCAGGACAGAGGAGCATCAGATGTCTTCAGCATTTTTACTGACTCGTATAACAGGGCTGAAGACGAACATGGAACTTTTGATACCAACCCTTTCAGCCCCGGTCACCAGACATCTGTTGGCACCATT

Function

GO: NA

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131475 lncRNA downstream 199597 14447338 ~ 14449781 (-) True G105112
TU131470 lncRNA downstream 214711 14427419 ~ 14434667 (-) True G105107
TU131467 lncRNA downstream 229325 14419701 ~ 14420053 (-) True G105105
TU131442 lncRNA downstream 387468 14218955 ~ 14261910 (-) True G105080
TU131436 lncRNA downstream 445842 14198827 ~ 14203536 (-) True G105077
TU131557 lncRNA upstream 212802 14889226 ~ 14889437 (-) True G105176
TU131570 lncRNA upstream 252377 14928801 ~ 14929049 (-) True G105187
TU131596 lncRNA upstream 377992 15054416 ~ 15054817 (-) True G105213
TU131604 lncRNA upstream 442783 15119207 ~ 15119433 (-) True G105221
TU131635 lncRNA upstream 557279 15233703 ~ 15300851 (-) True G105249
AMCG00011230 mRNA downstream 73350 14546071 ~ 14576028 (-) True AMCG00011230
AMCG00011223 mRNA downstream 159797 14482370 ~ 14489581 (-) True AMCG00011223
AMCG00011222 mRNA downstream 182301 14465157 ~ 14467077 (-) True AMCG00011222
AMCG00011216 mRNA downstream 308638 14211625 ~ 14340740 (-) True AMCG00011216
AMCG00011211 mRNA downstream 653028 13993983 ~ 13996350 (-) False AMCG00011211
AMCG00011229 mRNA upstream 11755 14688179 ~ 14701429 (-) True AMCG00011229
AMCG00011232 mRNA upstream 147100 14823524 ~ 14833642 (-) True AMCG00011232
AMCG00011233 mRNA upstream 208010 14884434 ~ 14890305 (-) True AMCG00011233
AMCG00011239 mRNA upstream 403960 15080384 ~ 15130043 (-) True AMCG00011239
AMCG00011238 mRNA upstream 559201 15235625 ~ 15238725 (-) True AMCG00011238
TU131409 other downstream 580817 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 652789 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 970116 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 1282304 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 1705237 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 693978 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 823110 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 1286914 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 1287028 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 2281757 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00014350 False 3885 mRNA 0.50 21 NC_007125.7 22297257 ~ 22361604 (+)