RNA id: AMCG00011232


Basic Information

Item Value
RNA id AMCG00011232
length 1020
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00011232
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14823524 ~ 14833642 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCTACACCACAGACGACATTGAGTTCTACTGGCGGGGTGGCGACCATGCCGTGACCGGTGTGGAGCGGATAGAGCTGCCGCAGTTCTCCATTGTGGACTACAAGCTGATTTCCAAGAATGTGGTGTTCTCCACAGGAGCTTACCCCAGGCTGTCCCTCAGCttcaaactgaagagaaacatcGGATACTTCATCCTGCAGACGTACATGCCTTCCATTCTGATCACCATTCTCTCCTGGGTCTCCTTTTGGATTAACTACGACGCCTCGGCTGCCAGGGTTGCTTTAGGAATTACAACGGTGCTCACCATGACAACAATTAACACTCACTTGAGAGAGACCCTTCCCAAGATTCCCTATGTCAAGGCCATTGACATGTACCTGATGggctgctttgtgtttgtgttcttggCTCTGCTGGAGTATGCTCTGGTCAATTACATCTTCTTTGGAAGGGGACCCCAGCGTCAGAAGAAGGCAGCAGAGAAAGCTGCCACAGCCAATAATGAAAAAATGCGAATGGAGGCCAATAAGTGGTtggtgggaaatgtagttcagAGAGACGATGCTCTGTATGCCAGAATGAAACAGAGGGAAATTGACGCTCATGACTCGATGTGGGAACCGATCTTTGTGGAGGATGCAGCAATAGGACTAGGCGAGCAAAAGAATAAGATGGACCCccatgaaaatattttgttgagCACTCTTGAAATCAAGAATGAGATGGCTGCCTCAGAGCTCACCTTAGGCTTAGGTGACCCAAGGAGCACCATGCTTGCATATGACAGCTCCACTCTTCAGTATCGTAAAGCGGGATTGGCCAGGCACAGCTTTGGGCGAAATGCTCTGGAGAGGCACGTGGCCCAGAAGAAAAGCAGGCTACGAAGACGTGCATCCCAGCTGAAAATCACCATCCCCGACTTGACTGACGTAAACTCTATTGACAGGTGGTCAAGGATGATTTTCCCCACcgttttctctttcttcaaCATCGTGTATTGGCTCTACTACGTCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131475 lncRNA downstream 373743 14447338 ~ 14449781 (-) True G105112
TU131470 lncRNA downstream 388857 14427419 ~ 14434667 (-) True G105107
TU131467 lncRNA downstream 403471 14419701 ~ 14420053 (-) True G105105
TU131442 lncRNA downstream 561614 14218955 ~ 14261910 (-) True G105080
TU131436 lncRNA downstream 619988 14198827 ~ 14203536 (-) True G105077
TU131557 lncRNA upstream 55584 14889226 ~ 14889437 (-) True G105176
TU131570 lncRNA upstream 95159 14928801 ~ 14929049 (-) True G105187
TU131596 lncRNA upstream 220774 15054416 ~ 15054817 (-) True G105213
TU131604 lncRNA upstream 285565 15119207 ~ 15119433 (-) True G105221
TU131635 lncRNA upstream 400061 15233703 ~ 15300851 (-) True G105249
AMCG00011229 mRNA downstream 122095 14688179 ~ 14701429 (-) True AMCG00011229
AMCG00011231 mRNA downstream 147100 14649378 ~ 14676424 (-) True AMCG00011231
AMCG00011230 mRNA downstream 247496 14546071 ~ 14576028 (-) True AMCG00011230
AMCG00011223 mRNA downstream 333943 14482370 ~ 14489581 (-) True AMCG00011223
AMCG00011222 mRNA downstream 356447 14465157 ~ 14467077 (-) True AMCG00011222
AMCG00011233 mRNA upstream 50792 14884434 ~ 14890305 (-) True AMCG00011233
AMCG00011239 mRNA upstream 246742 15080384 ~ 15130043 (-) True AMCG00011239
AMCG00011238 mRNA upstream 401983 15235625 ~ 15238725 (-) True AMCG00011238
AMCG00011237 mRNA upstream 413550 15247192 ~ 15272628 (-) True AMCG00011237
AMCG00011245 mRNA upstream 448935 15282577 ~ 15295505 (-) True AMCG00011245
TU131409 other downstream 754963 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 826935 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1144262 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 1456450 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 1879383 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 536760 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 665892 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 1129696 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 1129810 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 2124539 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037940 True 1515 mRNA 0.47 9 NC_007132.7 42226113 ~ 42374228 (+)
grasscarp (Ctenopharyngodon idella) CI01000040_00240852_00305487.mRNA False 1323 mRNA 0.48 7 CI01000040 240852 ~ 305487 (+)