RNA id: AMCG00011233


Basic Information

Item Value
RNA id AMCG00011233
length 720
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00011233
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14884434 ~ 14890305 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGcgccccctgccccctgccccgCTGCCAGCCCCGGTGGGCACCCTGGCAGCGGCAACACATGCATCGCCATCGAGTCAATGGACACCCATACCTGCGCATGGCTGCGAGTGTGCTGCTGCCTCGACACTATTCGCGGGTTGCAGATCAATTCGTTGCTTTGATGATGATTGGAAATTGCTCTGCCACCACCAGCATCAGCAGCCGCTGCTCCTTGATGTTGTGGTAGAGTGTGCGCATGCGCCCCACATTGGAATTACTGCACTGGCCAGAATAAGTTGGATCTCGTCTGTCTTCACTGAAATCCAAAATCATATCAAAACTATGGCGATGTTGAGAATCAGGAAAAGGAGCTACTTTGGGGTCTGGACCTTTCCTCTAATAGTGGCAGTGGTCTGTGCGCAGAGTGTCAATGACCCTAGCAATATGTCACTGGTAAAAGAAACTGTGGATAGACTGTTGAAAGGATATGACATTCGCTTGAGGCCAGATTTTGgagGTCCCCCGGTGGCAGTAGGCATGAATATAGACATTGCCAGCATAGACATGGTATCTGAAGTCAATATGCACAAGATTAAAGCCAGTGGAGTAAGTTACTCCATTGAAAATCCCTTTCCCTACCTCTCCAGCAAGTCTCTACAGAAGGGCCAGCAGATGCTGCATTGCCAAGAAGACTCATTAACGACCCTGATGAGGGAGAAACGAGAGGAGTTCCTTTAA

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131475 lncRNA downstream 434653 14447338 ~ 14449781 (-) True G105112
TU131470 lncRNA downstream 449767 14427419 ~ 14434667 (-) True G105107
TU131467 lncRNA downstream 464381 14419701 ~ 14420053 (-) True G105105
TU131442 lncRNA downstream 622524 14218955 ~ 14261910 (-) True G105080
TU131436 lncRNA downstream 680898 14198827 ~ 14203536 (-) True G105077
TU131570 lncRNA upstream 38496 14928801 ~ 14929049 (-) True G105187
TU131596 lncRNA upstream 164111 15054416 ~ 15054817 (-) True G105213
TU131604 lncRNA upstream 228902 15119207 ~ 15119433 (-) True G105221
TU131635 lncRNA upstream 343398 15233703 ~ 15300851 (-) True G105249
TU131651 lncRNA upstream 408340 15298645 ~ 15322712 (-) True G105261
AMCG00011232 mRNA downstream 50792 14823524 ~ 14833642 (-) True AMCG00011232
AMCG00011229 mRNA downstream 183005 14688179 ~ 14701429 (-) True AMCG00011229
AMCG00011231 mRNA downstream 208010 14649378 ~ 14676424 (-) True AMCG00011231
AMCG00011230 mRNA downstream 308406 14546071 ~ 14576028 (-) True AMCG00011230
AMCG00011223 mRNA downstream 394853 14482370 ~ 14489581 (-) True AMCG00011223
AMCG00011239 mRNA upstream 190079 15080384 ~ 15130043 (-) True AMCG00011239
AMCG00011238 mRNA upstream 345320 15235625 ~ 15238725 (-) True AMCG00011238
AMCG00011237 mRNA upstream 356887 15247192 ~ 15272628 (-) True AMCG00011237
AMCG00011245 mRNA upstream 392272 15282577 ~ 15295505 (-) True AMCG00011245
AMCG00011246 mRNA upstream 438031 15328336 ~ 15346964 (-) True AMCG00011246
TU131409 other downstream 815873 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 887845 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1205172 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 1517360 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 1940293 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 480097 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 609229 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 1073033 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 1073147 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 2067876 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU208402 False 6871 lncRNA 0.37 11 CI01000040 197416 ~ 313352 (-)
rainbow trout (Oncorhynchus mykiss) TU208402 True 1477 lncRNA 0.57 2 NC_048566.1 74333024 ~ 74334618 (-)