RNA id: AMCG00011239


Basic Information

Item Value
RNA id AMCG00011239
length 1410
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00011239
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15080384 ~ 15130043 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTCTACACCGTGGGAAACAGTTTGAGCTAGGGGCATGGACAAATGGCTGGACGCAGGCTGAGAAAGCAGGCCATCTTGCAAAAGCATTGGAGGGGCGGGCTCAACAGGTGCTGCAAGACGTCACTCTACAAGAACGTCACCAATTCTCAGCCCTGGCTGCAGCTCTTCGCAGGCGTTTTGGTGAGGAAGAGACGGCTGAAAAGCTGTCTGAAAAAAGAAGACAGGTGGGCGAAAAACTCGGTGCGCTTGCTGCAGACTTGAACTTCTTAGTGAAGAAAAGCTATCCTGACAAGCTGGCTTTACAAGCTTTCCTACGTGCATTAACCCCTGAAAACCTGCGGCAGCAAGTGCGTCTCACAGCTCCTGTTTCACTGGATCAAGCATTAGAGCAAGCAAAGAGAATTGAAGCAGTAATGAGGGACAGTTATAGCGGGCAGGCACGTAGCCAAGTTTTAACCTGTCGAGCTGGGGAAGACGTTTACGATGAAAGTGAGGGGGAACTGTGTGTCAAGCCATGTCAGCTGAACAAATACAGCGCCTTTGCTGTCGGCGCTGTGGCAAGAAGGGCCATTTTGCTTATGAATGCCGTAGCCCACTGCCACGCAACACCTCGGAACGGCCAACGGGACGATATAAAAGGGGGATCACTGTCCTGTccttcctctccccctccctatGCTGAAACCACTGCAATCGTTGGCCGGATCAGGCAGGGCCGCAGCCTCTTTCTCTCCTGCAGCCTGGAGGGGGAGGCTTGCAGAGCCTTGATTGACACAGGCTCTACCATCTCCATCGTCCGTCCTGACCTCCTCCCACCACACGATGAAGACGCATTGACTGCTTGGAAGCCCACCCAGGCGCAACACTTGAGCTCTGCAGTGCTGAACTGCATGCTGGGAAGACCAGAGTACAGCTGGAGGCTGGCAACGAAAAGATGGGATCTCCATCTCTTCCATGAGGGAGTCCCCACAACAGCAACGGGGGGAAGATGGCCAGCCCCCCCTTGGACTAGAAGTGTCGTCTACAGCAGCGCAGGAGTCCAGATCAAAGGGGCCATCAGAAGAGACACTACAGGCAGTGCAGGAGCAGCAATCCACAGCAATGCGGACGCATTATCCCGCCGCCCCTGCGAGACAGAGGCCTGCTGCCACTGGGAGGGGTACGTGGAGTCGGGGAAGGGGGTCAGGGGCCATTGGCGGTTAGAGGTTTACAAGCCAGTGACAGAGCCTGttgtctccatctctgtcttctcctcctcctcctcctcctcctcctcctcctccaccttctCTCTATTCTCCCAGTACCCAACTGAAGCTGCTGACAAGAATCCCATTCCTTTGAGGTTCTCGTCATCTCCGAATCTGGAACAcatATCCCTGAAGAGTGAAACTGCCAAGCATACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131596 lncRNA downstream 25567 15054416 ~ 15054817 (-) True G105213
TU131570 lncRNA downstream 151335 14928801 ~ 14929049 (-) True G105187
TU131557 lncRNA downstream 190947 14889226 ~ 14889437 (-) True G105176
TU131475 lncRNA downstream 630603 14447338 ~ 14449781 (-) True G105112
TU131470 lncRNA downstream 645717 14427419 ~ 14434667 (-) True G105107
TU131635 lncRNA upstream 103660 15233703 ~ 15300851 (-) True G105249
TU131651 lncRNA upstream 168602 15298645 ~ 15322712 (-) True G105261
TU131695 lncRNA upstream 243304 15373347 ~ 15374763 (-) True G105291
TU131679 lncRNA upstream 255673 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA upstream 261689 15391732 ~ 15396392 (-) True G105298
AMCG00011233 mRNA downstream 190079 14884434 ~ 14890305 (-) True AMCG00011233
AMCG00011232 mRNA downstream 246742 14823524 ~ 14833642 (-) True AMCG00011232
AMCG00011229 mRNA downstream 378955 14688179 ~ 14701429 (-) True AMCG00011229
AMCG00011231 mRNA downstream 403960 14649378 ~ 14676424 (-) True AMCG00011231
AMCG00011230 mRNA downstream 504356 14546071 ~ 14576028 (-) True AMCG00011230
AMCG00011238 mRNA upstream 105582 15235625 ~ 15238725 (-) True AMCG00011238
AMCG00011237 mRNA upstream 117149 15247192 ~ 15272628 (-) True AMCG00011237
AMCG00011245 mRNA upstream 152534 15282577 ~ 15295505 (-) True AMCG00011245
AMCG00011246 mRNA upstream 198293 15328336 ~ 15346964 (-) True AMCG00011246
AMCG00011244 mRNA upstream 231273 15361316 ~ 15364890 (-) True AMCG00011244
TU131409 other downstream 1011823 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 1083795 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1401122 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 1713310 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 2136243 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 240359 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 369491 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 833295 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 833409 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 1828138 16958181 ~ 16961069 (-) False AMCG00011290