RNA id: AMCG00011244


Basic Information

Item Value
RNA id AMCG00011244
length 1635
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00011244
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15361316 ~ 15364890 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGCACCAACACACAAAGtgGAATTCAAACCTCTCCGAGCACAAGTGACCAGCCTACCATAGACTCCAGTTTTAAGTGTATTACTTCATCTACGTCATACTTCACTGTGGAGTGATAGGAGGACTGATCTCTTCCCATGATTCCCCGCGTAGTTAGTGATCCAAGATGGCGACGCCCATGCATAGAATAATTGCTCGTAGACAAGCAGAAGCAAACAAGCAGCATGTTCGGTGTCAGAAGTGTTTGGAATTTGGCCACTGGACGTATGAGTGCACAGGGAAAAGGAAGTACCTGCACAGGCCGTCAAGGACCGTGGAGATGAAGAAGAGACTCAAGGAGAATGAGAACAATTTGGCCATCATGCCAGGGCCAGGCAGGGAAGGCTCGAGTGAGAggaagatgaaaaagaaaagGTCAAAGGAATcgagcagctccagcagcagtGACTCCAGCAGTTCGTCCAGCGACTCGTCCTCCGACAGCGACTCGTCCTCCAGCTCCTCTTCAGATAGCGACAGCAGCAGTGACAGCTCCAGCTCCTCTGATTCCAGCAGCTCCGACTCGGACTCCTCCAGTGATAGCAGCTCGGACCAGGAGCCTCCcaagaagagaaagaagaagtaaaaaaaaataataataataatgtaatggatGCTGTTCCATATTGAGAATTCCAGGCGTTCTACTTCTACTTGCTGTGCAGGCAAAATGGCAGTTATATCTTGTATATAAGGTGTAGAAGGGTGCTGAGCGGTGCTGTAGAGACCACAGGGCTCTAGGTGTCTTTTAGTGGGAAATAATTCTCCAACCCAGAAGAGGtatccatttgttttaaagaacacaGAAAGGACACCAGACTTGGTGAGGAACAATTTACAGGTTCTCTCCTCACACCACTGAGAACTTTTAGCTATTGATCCTTctctttttatacttttttccctcctttgtACTATTcttcaaataacaaaaaagtgtatttcgTATTCAAAAATAAGgtctgttaatgttttttttctgatttataCAGATATTTCCTAGTAAGCACACTGCACAGGTAACTGCATTAAGTATTCCACCAAGGACACATTCTCCTGGCTTGTAAAATCACAAGTCTGGGAGTCTGTATGAACTGGACGATGTAAAATAATTCCTGGCAGTTTTCCCTAGCTTTTGTCTACATGGTTCAAGCCAGCTTTTATCTCTTCAGCTTTGGTTTCAGTTAAATGCAattcacaaatgtaatgttCTTAATTCAGGAGTTCCAGGTTAGTGGATTGATgttcattttatacatatttcattttgtgttaaatCTATTCAGATTAAAACTGTTAAACTGTTAAAACTGTTCATTGCAAAGGGCAGATTTGTTGTACCACAAGTTATCAATATGTAACTGGTAGTTTTGaaagaacttaaaaaaaagtttgttgcAAAacatgcttgttttattttcatttttttattactattttcaacatttttgaaaatacagaagaATATGTTGACATGGGCTTCATTTAATTCATTACATACTGAAGATATGATACACACCACAGTTAATTCTGTAGCAGGTCATTACCTTGAAACTACACACATAATCTACAGAAGTGGGAAAGAATTCACATTTG

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131651 lncRNA downstream 38604 15298645 ~ 15322712 (-) True G105261
TU131635 lncRNA downstream 60465 15233703 ~ 15300851 (-) True G105249
TU131604 lncRNA downstream 241883 15119207 ~ 15119433 (-) True G105221
TU131596 lncRNA downstream 306499 15054416 ~ 15054817 (-) True G105213
TU131570 lncRNA downstream 432267 14928801 ~ 14929049 (-) True G105187
TU131695 lncRNA upstream 8457 15373347 ~ 15374763 (-) True G105291
TU131679 lncRNA upstream 20826 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA upstream 26842 15391732 ~ 15396392 (-) True G105298
TU131742 lncRNA upstream 170480 15535370 ~ 15569124 (-) True G105326
TU131866 lncRNA upstream 667361 16032251 ~ 16035023 (-) True G105427
AMCG00011246 mRNA downstream 14352 15328336 ~ 15346964 (-) True AMCG00011246
AMCG00011245 mRNA downstream 65811 15282577 ~ 15295505 (-) True AMCG00011245
AMCG00011237 mRNA downstream 88688 15247192 ~ 15272628 (-) True AMCG00011237
AMCG00011238 mRNA downstream 122591 15235625 ~ 15238725 (-) True AMCG00011238
AMCG00011239 mRNA downstream 231273 15080384 ~ 15130043 (-) True AMCG00011239
AMCG00011248 mRNA upstream 78300 15443190 ~ 15444125 (-) True AMCG00011248
AMCG00011251 mRNA upstream 136111 15501001 ~ 15515675 (-) False AMCG00011251
AMCG00011261 mRNA upstream 437583 15802473 ~ 15937457 (-) True AMCG00011261
AMCG00011259 mRNA upstream 598475 15963365 ~ 15973845 (-) True AMCG00011259
AMCG00011260 mRNA upstream 610141 15975031 ~ 15977007 (-) True AMCG00011260
TU131409 other downstream 1292755 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 1364727 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1682054 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 1994242 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 2417175 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 5512 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 134644 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 598448 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 598562 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 1593291 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile