RNA id: AMCG00011245


Basic Information

Item Value
RNA id AMCG00011245
length 4503
RNA type mRNA
GC content 0.56
exon number 7
gene id AMCG00011245
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15282577 ~ 15295505 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATTCCCTGGCCCAAGACCTACGTTTCGAAAGCATCAATAACCTAGACCTCACTCCTTTGAGCTGCCAGTCCAGTAGGCTCTCCCCTGCCAAGTCCACCAGCAGTATAGACCAGTTCACCCATCATCATGGAAAAGGAGATTCAGCTTATAGCTCCTTCTCAGGGGGCTCCAATGCCCCTGACTACTCCTCTCCCTGCCCTCTGGACGAAATACACCCCCACAGCCTGCATTACACTGACCTCAAGTACGTGAGGGCGGTGTACAACCCCAATGCTCTGAACTCTGATTCCAGGAGCATGGATCAGCTATACAAATCCGTGGAGGCCCTCCACTACCAGTATCGGCAGGATGGCCGGAGCAGCAGGGAGCTTCCCCCTCCACCCCCGGCTCGCCTGGACAGCTTCCTAACTATCAGGAACTTGGAAAACGCCCGGGGGTTTCAGAATCCAGAGGTCCAGCTGGCATACGCCTTGCATCGGAAGCCTCAGACGACTAATCCTGATGCTGCCAACCCCCGACCTGTCTCTGTATATGGCCACACAGCGTCACAGTCTAATCTGAAGGAACCGGTGGCCCGAGACGGGGCGGATCAGACCATGGACCAGCAAGAGCTGCCCAACCTTTTAAGTAGATCACCTCCGTCTTTTATACTGCAGGAATGCTTTAAGACCCATGCTGGTGGGACAGACAGGCACCCGGAAGGCCAAAAGAGAAGGCCTCACTCGGCTCATGGCAGCAACTTTTCAGAAACGATGCAGACAAGGAAACAACCGAATGTGATCAATGGCAACATCCAACACAAAGGGCAATATTACTTTGTGACTGGTGTATGTAAAACCCCAGAACCCAGTTTCCAAGACAGACTTTCAGAACTTACAGAAGGGGAGGTTGAGGGCCTTTCTCAAGGTGACCTTAGCCAGCACAGGGACCATAAGGATATAGTATCCAGCACTATCAATGATCTTCTCAACAATGTTAGGCACAGACGACAGAGCAGTTACGAAATCCAGAGCGGCTTAAAGGTTTTTACTGAGAACCCGGATTTGCATGccagaaacagagagaaagcGTTTCACGGTGAAACTGGGTTCAGCTCGTTGGTGGTTCCGGCCCAGACAGCCCAGTCGTTGTGCACCAATGTCCAGGAAGAAGGGCAGAACCCCCAGGGTCGAGAGATTGGCATTGGATCTCAACGGCACCACAGCAGGAGCCATCAAATCTTTTACTGTGGCCCAAAGGATAGTGCCCCGCAGTTGAATGCATCCAGCAAGGACACAAAGCCTCCCATACAGTGCATGGCCCAGgccaacaacacaaacaagggAGATCGCTTAGAACAGGTGAAAAGGCAGCCTCTGGAGGAAGTCGCTAATGGTAAAATCAACAAGGAAACGACTCCCCTGCTGTACCACCTGGCTGGCGAGAGCAGGGGGACCTTTGCATATAACTCCAGAAATGAAAATGCAGCCAAGCCCAGCTGGAAGGATATGAGGCGAAAGAGCGCCCCTCTTTTATGGATCCAGAGGAAGGAGGCCTGCGCAAGGGACGAGAGCCACTCcaagggcagcagcagcagcaaccagAGCAAAGCGGTTGAGGATGAAAACCAGGAACAAGACGAGGATCTGACCGGCTCAGGGACCTCTATGGACGACTGCTATAAGAAATACTACaaggaaaaattaaaagatGCCCAAACCATGGTCCTAATGGAAACCTCTTACAAGAGGAAGGACCTCCAACTCAGCTGGCCTCACAGGATCAAGCAGAAGCCTGAGGAAAGGCCCTCTGTGATTCATTCCAGGTCATGCTCTCTCTCATACACCCCTGAAATTACATCAGAATGCCCAAAGCCTGCAGAAACAGAATCTCTTTGGAAGAAGGTAGCTGGGAAGCTTCCAGCAGCACGGATTGGAGGGAGAAAGAGGCTCACACCTGAGCAAAAGAAACTGTGTTACTCGGAGCCAGAGAAGTTGCATCATCTGGGGGATTCCCCCAATCACTCACAGAACAGCTCACTGGGGAATGAAGCTGAAGGCTTACTGTCAGAGGATGACCTCAATGAGCATGGCCTGGTAGCTGCCAGGAGGAAAATGTTTGAAACCAGAGGCCGGGCCCTGTCTGCCTCGAGCCTCTCCAAGACCACACTGAAGCATATCCAGCACAAGGCTCTTGTGGCGTACGTGGAACGCAAGACGGGACACAAGACAGCAGAGCCCCAGCAGCCAGCTTCCGAATCTCCTGTTCAGTGGCACTCAATATCTGGGAAGTCTTCAGAATGGAGGTCACGATCCTCTTCTGGTAGTGAAGTGTCCAGAAAGAAGCTGCCCAGACCTCTGTCTGCTGGCCGTGTTCTGGATTCAGTGTCAAGTTCCATCAGGTATGCCCAGTCCAGTGCCGTGCCCCCAATCGACTCGCAGCGTCTGCCCAGCTGGAGAAAGTCTGGCAGCCCAGCTTTACCAACAGATGGAAAATCGGCCTCTGCGGAGAGTCTTCTGGACCAGCCCAAGCAGAAGGATTTTCACCGAGCCCGGTCAACATCATCCCCTCACCCCTCTCAGACTGAGAGCTACACAAATGAACTGCCACCTGTCTCTAAGACCAAGAACTCCAGTTACCAGAAGACCGAAGAAGCGGTGAAGCCTGCATGCAGAGGCAGAGCAGCGTCGGTGATGGCACCACGGGGGAAGTCCATGGAGGAGCTGGTTGCGTTTCGCCTTGTGGGGCCTCCAGTTCAGAGCAAGAGCTCGGAACAGCTGGACCAGATGCGTGGCAGGGTGGCTCTGCCAGAGCACGAGAAGAAGAGCGTCGCCTGTACGTGGGAGGGAAAGCCGGGCCGCCCTGCTGCAGGGACGGCTATCAAGACGCTGGCCTCCTCTCTCAAGTCGAGCTCAGACCTGCAGCCAAGGAGCAATGATGATATGTGTGGGGGCGTGAATGCCGTCGGGGGGCAGGACAGACACTCCAGAGCTCTGGAATCCCTGAACTTCAACATGGAAACGCCAGCTTTGGACTCTGCTCTTCAGGTCAGGACTCCCTCCGTGCTTCAGGAATCTCCTGGCTCCGGCTCTTTCCTCCCCGAATCCGGGGAAAGCGGCATTCTCTATAGAGGTCACCCACCCTGGCTGTCCTCTCACTCTGGAGAGACCCCGGAGAGGGACCCTAGCTTGGACAGCTCTGCGGCCCCAGAGAACACTCCCCTGCACACACCGCTTCAGAAGGGACCTAACGAGACTGTATCGTCCACCAGGATAAAGACGGCTCCTCCTGTGCAGTCGTTGCTGCTAGAAGGTGCCACAGACAAGATGGAGAGCAGCAGCCCTGATCCCTCTCAGGAAGTATCGCTGAGCAGAGGGGTGACCACAGATCGAGCAGCCTGGCCCCCAGCGCCCGACAGAGCCAGATCAGCAGTCAAGCTTTTTGAAGAGAGAGAGTTCTCAAAAAGTGACGCCAGCGCAGAAGAACCGGCCTCTCTGCCGCCGGTGCCAGGGCCCAGTGAGCCCGAACAAGCGCCCGCCACAACACATCCAGCAGGGGAACCGGCTCCGAGCGCAAAGCATGAGGAGCCaagcagagagaaggagatcCAAGGTGCGGAGCCGGCCACGGTGTTGGCCAGCCCTTCCACCAAGGCAGAGCAGCGGTTGGAGGAACTCATGGATGAGATTGTCGCCGAAGATCAGTCGTTGGCGTCAGTGCTGATTCCAGAGGCCAGTCGGAAGACCACCGTGACGCTGATGGAgcagctgctgtctgaggaCACGTTGCTGATGGAGGAACACTACAAGAGGAAGCAGGAACAGAACAGGGCTGACAAACAACACAGCAGGGAGAATTCAGAAATCGAGGAAGAATCCGAGATGTCTAGTACCCGCCTGACTGCTGAAAACCCAGTACCTAAAACTCAGAGTGGAAACACTCAAACACAGGAGACTGCAGCCTCTGTACAGGGCAACATCACAGTGAAAAAGAGGCAGCTGATGGCGTGCATTGAACAGCATCTGCGGGGGCTGGAGCAGCAACGGGCGGCGCTGACGGAGGCCATGCGGAGGAACGGGGCCCTGGGCAGTGCTTTGGGGGCTCTGGTGAAGGACAGCTGCCAGCCCAGCGAGTACGAGCGCTACATGCTGTTCATTGGGGACCTGGAGCGCGTGGTTAGCCTGCTGCTCTGCCTGTCCGCCCGCCTGGCCCGCGTCCAGAACGCACTGAGCGCCGTCGACCAGTTCACCGACGCTGAGGAGAAGCAATCCCTGGACGAGCGGCATCGTCTGCTGTGCAAACAGAGGGACGACGCCAAAGACCTGAAGGACAACCTGGACCGCAGGGAGCGCGTGGTGTCCGACATCCTCTCCAAGTACCTGAGCCAGGAGCAGCTCTGTGACTATAAGCACTTCGTCAAAGTCAAGGCCTCCCTGTTAATAGAGCAGAAGGACCTGGAGGAGAAGGTGCGAATCGGCGAGGAGCAGCTCCAGTCTCTTCACAGCAGCATTCCTGCttga

Function

GO:

id name namespace
GO:0060113 inner ear receptor cell differentiation biological_process
GO:0035315 hair cell differentiation biological_process
GO:0042490 mechanoreceptor differentiation biological_process
GO:0042491 inner ear auditory receptor cell differentiation biological_process
GO:0060563 neuroepithelial cell differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131604 lncRNA downstream 163144 15119207 ~ 15119433 (-) True G105221
TU131596 lncRNA downstream 227760 15054416 ~ 15054817 (-) True G105213
TU131570 lncRNA downstream 353528 14928801 ~ 14929049 (-) True G105187
TU131557 lncRNA downstream 393140 14889226 ~ 14889437 (-) True G105176
TU131475 lncRNA downstream 832796 14447338 ~ 14449781 (-) True G105112
TU131651 lncRNA upstream 3140 15298645 ~ 15322712 (-) True G105261
TU131695 lncRNA upstream 77842 15373347 ~ 15374763 (-) True G105291
TU131679 lncRNA upstream 90211 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA upstream 96227 15391732 ~ 15396392 (-) True G105298
TU131742 lncRNA upstream 239865 15535370 ~ 15569124 (-) True G105326
AMCG00011237 mRNA downstream 9949 15247192 ~ 15272628 (-) True AMCG00011237
AMCG00011238 mRNA downstream 43852 15235625 ~ 15238725 (-) True AMCG00011238
AMCG00011239 mRNA downstream 152534 15080384 ~ 15130043 (-) True AMCG00011239
AMCG00011233 mRNA downstream 392272 14884434 ~ 14890305 (-) True AMCG00011233
AMCG00011232 mRNA downstream 448935 14823524 ~ 14833642 (-) True AMCG00011232
AMCG00011246 mRNA upstream 32831 15328336 ~ 15346964 (-) True AMCG00011246
AMCG00011244 mRNA upstream 65811 15361316 ~ 15364890 (-) True AMCG00011244
AMCG00011248 mRNA upstream 147685 15443190 ~ 15444125 (-) True AMCG00011248
AMCG00011251 mRNA upstream 205496 15501001 ~ 15515675 (-) False AMCG00011251
AMCG00011261 mRNA upstream 506968 15802473 ~ 15937457 (-) True AMCG00011261
TU131409 other downstream 1214016 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 1285988 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1603315 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 1915503 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 2338436 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 74897 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 204029 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 667833 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 667947 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 1662676 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1236111 True 3054 lncRNA 0.42 2 NC_048576.1 52689855 ~ 52693641 (-)