RNA id: AMCG00011246


Basic Information

Item Value
RNA id AMCG00011246
length 4062
RNA type mRNA
GC content 0.50
exon number 21
gene id AMCG00011246
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15328336 ~ 15346964 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATGAACAAGCTGAAACCTCCCTAGCCTGTCCTGGTTATTAGATTTATCTCAAAGCAAATAATGTTTGTACTTTTGCCACCTCGTATGTTTCAGTAGAGCACCCCGTTCATTGATCTCGTATCAATATCGACAGGAAGGTGGAATATGAAACTACGGACACGAAAGCTGCTGGAGTAGTACTGAATTTCTCAAATGATTCAGTCTTTTGAGCCATGGCCTCAAAGTCAGGCAACATGAACCGTGAAGACCGGAATGCGCTCCGtttgaaagaaagggaaagGAGAAATCAAGAAATCCAACAGGGCGCAGAGGCCTTTCCAGCTAACTCCCCTCTCTTTCCTGAACCTTATAAAGTTtcCAGCAAGGAAGATAAACTATCAAGCCGCATCCAGAGCATGCTTGGTAATTACGACGAAATGAAGGACCCGATTGGAGACAAAACTCTTGAGAAGCTCATTGTGATCCCCAAACCCACTGTGACCTCTACCCCGGAGGAGAAATCCACCCAGTCATTTCTTGGGGAGCAGCAGCGTGTTAGTGGCACAAGTCAGAGTAGCAAATGGACTCCTGTAGGACCTGCTGCCAGCACCTCCTCCTCTCAGTCACAGAAAAGATCCAGTTTACAGAATAGCCACGGTAGTGGCCAAAGGACTACCGGTAGCAGCAGTAGCCAAAGACACGAACGGGACTATAGCAGCAGCCAGAAGAAAAGCAAGCATGGGTCAGATCACTCCAAATCTCACACGTCCAGCCCAGCCAAGGGTTCTTTGAGTTCTAGTCATTCCAGGTCACATGGGAGTGACCACCACGGCAAAGAGCGCCATCGGTCCAAATCCCCCCGCGACCGGGAAGCCAACTGGGACTCTCCTTCCCGCGTCCACTCATTTGCACCCAACGGGCAGCACTCCAGCCAGGCTTTCCCCCCTTCGCTGATGTCCAAGCCTAGCTCCATGCTGCAGAAGCCCACAGCCTATGTCCGCCCTATGGATGGCCAGGAGTCTCTTGAACCCAAGACGTCGTCCGAGAACTACAGCAGCCagtcacacagcagcagcatggGAGAGATGAAGTCCGGCAGCAAGGCGTCTCTTTCCAAGCTTAAGATCCCGTCCCAGCCCCTGGAGGAAATGACTCAGTCATGGCCTCCTCCTTTGACAGCCATTCATACTCCATGTAAAACTGAGCCTTCAAAGTTTCCATTCCCAGCCAAGGATACTCCACATGCACATTTCAGCAGTGGGGCACAAAAGAGATATGGTTCAAAAGCATCTTCAGCCAGTCATCTACCCAAAACAGCTGATGGTGACCAAGGAAACATGTTGGAAGATGACCTTAAGCTCAGCAGTAGTGAAGATAGTGATGTCGAACAGcagGAGTCTGCAAAGCCTGGTTCAAGAATTACGCCAAGTACTTCTGAGCCCTCCCAGGACACCCAGGAAGGAGCAGAGCAATCACGCGAGGACTCAAGCAGCCACAGCGGGTCTGAGAGCAGCTCTGGCTCCGACTCAGAGAGTGAAAGCAGCTCCAGCGACAGTGAGGCCAATGAGCCGCCCAGAGCCGCCTCCCCTGAGccTGAACCTCCAACGGCAAACAAATGGCAGCTAGACAACTGGCTTCAAAAAGTGAACAAGTTCTCCCCTGCTTCGCCAGTGGACAGCAATGCCCCCACTAAGTACAAGAAGGAGAGCAGGGAGCAAAGCACGGCCAGAGGGTATGCTGGTCAGGGCAGCTCCAAAGACTCTGGCACCTCTGCCACTGGGAGAGACTCGCGAGCAGCCCAGAAAGGGTCTGAGAGCGGCCGTGGCCGTCAGAAGTCCCCAGCACAGAGCGAGAGCACAACCCAGCGGAGAACTGTGGGTAAAAAGCAGCCCAAGAAATCGGAAAAGCCCCCGGTGGTGGAGGAGCCAAAGGGGGGACTGAAGGTTGAGAGTGAGCCCCCACCGGAAATCCCGCCTAACCGACCGAAAGCTGCCACCAAGGGCTCCCGCAAACCCAACATCAAGAAGGAACCCAAGTCCTCGCCACGGCCTGCAGCCGACAAGCGGAAGTACAAGACTCCTAGCAAGACTTCCCAGAAGTCCAAGGAGTTTGTAACGGACTCTTCATCCTCCGACTCGGAGGAAAACGAGAGCATTCCCTCTTCCTCACAGACCCCTAAGTACACGGAGAGCATCAGGACTCCTGTGTGCATCTTCTCTCCTATGGAAGAGAAGGAGCTTCTCTCTCCTCTGAGTGACCCGGATGACCGGTACCCTGTTAGACAGGAACTGATGGTCAAAATCGATTTGAACTTGCTTTCCCGAGTCCCTGGGAGACTTTACAAGGAGCTGGACCAGCCCAAGGTGGAAAGGGAGAGCACTGTCGACAGGGAAGCCAAGGACTTTCAGAAGCAGCCCAATGAGAGAGGTTCTAGCAAGAGTAAAAGGAAACCCAAgAATGAAGATGACCTTGTCAAGAGTGAAAGCAAGAAGCCTAAGCTGGAAGAGAAAAGCTCTTCTAACCACAAGACTAGTAGTAAAGAGTCATCCAAGAGGGGCCTGGAGAAGGAAAAGGAGCCTGTGCCCTCTCCATCAGTGACGGTGGCACAGAAGACCCCTAAGGTAGACCACCAGAGCCGCAAGAGGACAGCCAGCCAGTCCTCGACCTCCATctccagcagcaccagcagcaatAAAGGCGGAGGGCGCAGCGGCAGCAAGAACAGCTCCTCCTCCAAGCACAGGAAGACTGAGGACAAGCACTCCACTGGTGCCAAGGAGGGCAAGgaaaaaaatctaaaaggtTCTGATAATCACCCTGCACCCCCTGCCCCATCATCAGAAAGTTCAAAGTCGAGAAGATCAAAACTCACATTTGAAGACCGGGTAAATTCCGCTGATTATTACTTACAAGAAGCCAAGAAGCTCAAGCACAACGCGGATGCTCTGatggacagattTGAGAAGGCTGTGTACTACCTGGATGCAGTTGTCTCTTTCATCGAGTGTGGTAATGCCCTGGAGAAAAGTGCCCAAGAAGCAAAGTCACCATTCCCTATGTATGCAGAAACTGTGGAGCTGATCAAGTACACTATGAAACTGAAGAGCTACATGGCTCCCGATGCAACGTCTGCAGACAAACGGCTAGCAGTGCTATGTCTCAGATGCCAGTCACTCCTTTACCTGCGGCTCTTCAAACTGAGGAAAGAGAGTGCACTGAAATATTCCAAAACTCTAACTGAACACTTGAAGAATTCCATAAGTAATACTCAAGCTCCTTCACCTGGAATGGGGGGCAAAGCAGCAGGCATGCCTTCCCCCGTGTCGCCCAAGCTCTCTCCGGGCAGCGCCGGGAGCTACTCCTCCGGGGGCTCCAATCCCAGCGGCAGCTCCTCTGTCACGATCCCTCAAAGGATCCATCAGATGGCCGCCAGCTACGTCCAGGTCACCTCCAACTTCCTGTTCGCTACTGAGGTCTGGGACCAAGCTGAGCAGCTGGCGAAAGAACAAAaagAGTTCTTCACAGAGCTGGACAAAGTGATGACTCCTCTGATCTTCAATACCAGCACTATGACGGACCTGGTTCGTTTCACGCGACAGGGCTTGCACTGGCTTCGGCTCGATGCCAAGCTTATACCATAGAGGCTGGGAACAGGACTTGTGATGATTTTCATATAAGCTGAACTGCCTCAGATGAATCCATAACACTGTGTCCATTTTTATATCAGATTttgccaaaaacaaaataacaaacaagtggAGCCCTGAGAAATTGCAAAAGGGCCGAATTCTaactatacaaacaaacacgTTCTTTATTACAACAATACTGCACTCTTCTGTCTGCCACTTTTGGGTTGTGTAATTGAAAAGCCATCTTTCTATTTGGCCTAAAGCcattttattcatgaaaataagctgaaagaatgttgttttttctaataGGCTATAGGCAGATTTATTTCTGCTGAGGTTTTTATGGGATCTATTCCCAAATGCAATTCTTATCAATAGTATAGTTCATAAATATCATAAACTCTTAAGTATACAATCTGTGATTTCCATAGTCTctgatggtttttt

Function

GO: NA

KEGG:

id description
K15185 AFF4; AF4/FMR2 family member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131651 lncRNA downstream 5624 15298645 ~ 15322712 (-) True G105261
TU131635 lncRNA downstream 27485 15233703 ~ 15300851 (-) True G105249
TU131604 lncRNA downstream 208903 15119207 ~ 15119433 (-) True G105221
TU131596 lncRNA downstream 273519 15054416 ~ 15054817 (-) True G105213
TU131570 lncRNA downstream 399287 14928801 ~ 14929049 (-) True G105187
TU131695 lncRNA upstream 26383 15373347 ~ 15374763 (-) True G105291
TU131679 lncRNA upstream 38752 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA upstream 44768 15391732 ~ 15396392 (-) True G105298
TU131742 lncRNA upstream 188406 15535370 ~ 15569124 (-) True G105326
TU131866 lncRNA upstream 685287 16032251 ~ 16035023 (-) True G105427
AMCG00011245 mRNA downstream 32831 15282577 ~ 15295505 (-) True AMCG00011245
AMCG00011237 mRNA downstream 55708 15247192 ~ 15272628 (-) True AMCG00011237
AMCG00011238 mRNA downstream 89611 15235625 ~ 15238725 (-) True AMCG00011238
AMCG00011239 mRNA downstream 198293 15080384 ~ 15130043 (-) True AMCG00011239
AMCG00011233 mRNA downstream 438031 14884434 ~ 14890305 (-) True AMCG00011233
AMCG00011244 mRNA upstream 14352 15361316 ~ 15364890 (-) True AMCG00011244
AMCG00011248 mRNA upstream 96226 15443190 ~ 15444125 (-) True AMCG00011248
AMCG00011251 mRNA upstream 154037 15501001 ~ 15515675 (-) False AMCG00011251
AMCG00011261 mRNA upstream 455509 15802473 ~ 15937457 (-) True AMCG00011261
AMCG00011259 mRNA upstream 616401 15963365 ~ 15973845 (-) True AMCG00011259
TU131409 other downstream 1259775 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 1331747 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1649074 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 1961262 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 2384195 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 23438 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 152570 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 616374 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 616488 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 1611217 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037958 True 3441 mRNA 0.54 20 NC_007132.7 43199237 ~ 43246873 (+)
grasscarp (Ctenopharyngodon idella) CI01000040_01206296_01212731.mRNA True 1011 mRNA 0.54 2 CI01000040 1206128 ~ 1212731 (+)