RNA id: AMCG00011248


Basic Information

Item Value
RNA id AMCG00011248
length 936
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00011248
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15443190 ~ 15444125 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGACGCAAAACTACAGATGGAGTCAAGGATTCCTCACCACATCCCAGGAGTCTCCTCTTCCATTATGGTACAGCCTTTGCTGGACAGCAGGGTCCCCTACGGGAGGTTACAGCACCCCCTGACCATCTTCCCCATTGACCAGATGAAGTCGTCTCACATTGAGAACGACTACATAGACAGTCCAGCCGTGGTGGCGCAGCAGCCGACCAGCCAGAAGCCCCTACGGGGGCCCCACGAATCCCTGCTGGTGGGCCACCCACACCACCACCTGCAGCGGTGTGAGCCCAACGACATCACGCACCCATGGATCTCGTTCAGCGGCCGGCCCAGCtccatcagcagcagcagcagcacgtcCTCGGACCAGAGGCTGCTGGACCATGCCGCCCCACCCCCTGTGGCAGATCATGCCTCCCCGCGCTCCATGAACATTCAACCCAAGCCTTTGAACTCCAAGCCCCTGGACCTCAAAGCCCCAGTGCCCCAGGAGGCCGTGAAAAAGCACATGCTGCTGTGTGATGAATGTGGCAAGTGTAAGTGCACGGAGTGTACCTTGCCCCGGACCCTGCCTTCCTGCTGGGTTTGCAACCAGGAGTACCTCTGCTCGGTTCAAAACCTTGTGGACTCTGCCACATGCATGTGCCTTGTCAAGGGAATATTTTACCATTGCACCAAGGACGACGATGACGAGGGCTCCTGCGCCGACCGGCCCTGCTCCTGCTCCCACTCGAACTGCTGCGCACGCTGGGCCTTCATGGGCGCCCTGTCCCTGGTGCTGCCCTGCCTGGTGTGCTACCTGCCTGCCATGGGCTGCGTCAAACTCTCCCAGAAGTGTTATGACACTGCCAGTCGCCCCGGCTGCCGCTGCACAGCCTCCCAGGCCTGCAAGGTGGTGGACGTGAAGGCCAGCAGTCAGGAGAAGCCATCCTGA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K17385 SPRY4; protein sprouty homolog 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131679 lncRNA downstream 38957 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA downstream 46798 15391732 ~ 15396392 (-) True G105298
TU131695 lncRNA downstream 68427 15373347 ~ 15374763 (-) True G105291
TU131651 lncRNA downstream 120478 15298645 ~ 15322712 (-) True G105261
TU131635 lncRNA downstream 142339 15233703 ~ 15300851 (-) True G105249
TU131742 lncRNA upstream 91245 15535370 ~ 15569124 (-) True G105326
TU131866 lncRNA upstream 588126 16032251 ~ 16035023 (-) True G105427
TU131884 lncRNA upstream 599304 16043429 ~ 16048522 (-) False AMCG00011271
TU131897 lncRNA upstream 694974 16139099 ~ 16141338 (-) True G105454
TU131922 lncRNA upstream 792003 16236128 ~ 16237685 (-) True G105473
AMCG00011244 mRNA downstream 78300 15361316 ~ 15364890 (-) True AMCG00011244
AMCG00011246 mRNA downstream 96226 15328336 ~ 15346964 (-) True AMCG00011246
AMCG00011245 mRNA downstream 147685 15282577 ~ 15295505 (-) True AMCG00011245
AMCG00011237 mRNA downstream 170562 15247192 ~ 15272628 (-) True AMCG00011237
AMCG00011238 mRNA downstream 204465 15235625 ~ 15238725 (-) True AMCG00011238
AMCG00011251 mRNA upstream 56876 15501001 ~ 15515675 (-) False AMCG00011251
AMCG00011261 mRNA upstream 358348 15802473 ~ 15937457 (-) True AMCG00011261
AMCG00011259 mRNA upstream 519240 15963365 ~ 15973845 (-) True AMCG00011259
AMCG00011260 mRNA upstream 530906 15975031 ~ 15977007 (-) True AMCG00011260
AMCG00011263 mRNA upstream 534572 15978697 ~ 15985898 (-) True AMCG00011263
TU131692 other downstream 70011 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 1374629 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 1446601 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1763928 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 2076116 13365083 ~ 13367074 (-) True G104909
TU131737 other upstream 55409 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 519213 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 519327 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 1514056 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 2285826 17729951 ~ 17733068 (-) False AMCG00011313

Expression Profile