RNA id: TU131737


Basic Information

Item Value
RNA id TU131737
length 2084
RNA type TUCP
GC content 0.37
exon number 3
gene id AMCG00011251
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15499534 ~ 15515675 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAAGGGTAGTGTAGGAGGGTGAAAGAATGCTTTGGCAACTAAATGTGTTATAAATTAAGAGTGCATTTCTGTCTGATAACCTGCTTTGTGTATAACCCACCTTGGCCTGGCTaccaaacctttaaaaaaaaaaaatctgttcctTCCAGTTGATAATGATCAGAATCGATGCTTCAGGGAGAGCTGTAAAGTTGCTGGAGTGTCGACAGGGCCaatactgaatgtttttttgtgttgcagAAAATCAAGGAGATTACCTACATGCATTCAGAGGGGATCCTGGCCGGGGAGCTGAAGCACGGCCCCCTGGCTCTCATTGACAAGCACATGCCTGTGATCATGATCATCATGAGGGACGCCTGCTACTCCAAGTGTCAGAACGCCCTGCAGCAAGTCACCGCTCGGCAGGGGCGGCCCATCATCCTATGCTGCCAGGATGACACCGAGAGCACAAAGAATGCCTACAGGACCATCGAGCTGCCGCACACAGTGGACTGTCTGCAAGGCATCCTGAGTGTCATCCCTCTGCAGCTCCTGTCATTCCACCTCGCCGTGATGAGGGGATATGATGTGGACTGCCCACGGAATCTCGCCAAATCTGTCACTGTGGAGTAATCATGCAGCAAACTGGAAACCATTGAAGGGAAGATGAAGAAAATGTCTTAATGTACCTGGTTGGGTTATCCTGGGTGTCTATGTGCATgtctacatatatattatatgtttgtgtatgtctgtgcatatatttatacatatttatagagTTCAGGACACTGCACACACCGcagcagtttctgttttttagtatatatggatatataatTACAACACATGGAAAGGTtgataaaatcaatgcattaatAACCATTTAGAAGGACTTAAGTAAAAAAACACTATGCAGTTGAAATCTGTGCCTTAACCTTATATACTTCTTCAGGCTACTGTGGAAGTGATaaggaaacaaatatgtttaCTTGTAGAGCAATATTTGAAGTTAATATTGTGCAATATTTTGGATAGGGGGACCATGTAACTCTGCAGTGAACAGGACAGTGTAAGTTATTGGACATGGTACTGGATGAATGTCTTTCtctatttttaaagtaacaatgtttttcttaaattaaatgcaaggCTATCTCAAAGCATGTGACCTTTTGCACTGATGCACCTACATTCCTCCTTCAGACCAGTAATTTCAGCACATATTCAATTCCAATTTAAAGAAGAGGTTTCAGGTCTCTCTTTGTATTTCTTGTTATTATGGGAATTACGTGAGAACTGGCCTAAAAGAATTGAATGCAACAGAAAGGATTATACTGGAGGACCAAAGTGAAAGCAATGTCCCACCACATAGCGTGCTCTTGGAATTGGCATATTTACAGATAGGACATACGACTACTAAACTATTGTCCAATTTGTAAACTATTTTGTGACATTCTTTCTGAATACTCACactaaaaatacagtttctgaTATCACTATGTATCTTTGCTTACTATGTGGTTGTTTACAGGTTTTCAATCAGAAGCTAAGGTACCAAAAAATATTCAAGGGGAATGTGAGTTTCTCAGTGCAACTATTTTCATAACTTAAAGGTTATTGCATACAATAGaacagtaattgtttttgtttaaaaatgtatggtcGATATTGTATGCCctataagaaaaaataactaaaaataactgAGCCCCTATTATACAAAGTCTGTTTCAACTTTTTAAGTTAACAGAGCTTTCAGTGTCACGTAGTTTAGGTTACTTgtgatttttgtaaaataatttgtttttaagtttttttcatagatcaaataataattgtttacCAAAATTTGTCCTAttaattttcttgcatttattttgttttatttgttatattcttCAAACTGTGAGCGATGCATTAGCTATTTAAAAGATGAAGACCAATTAccttttttaaagatattttatatatttttatgatacTGAGAGGACCTAGAtctgtgaatgttttaaaaatgcataataaaaaatgtttttgtttcaaagtCTCCTAATACACCGTGCAACAACTGTAAGTGGTTGGCAAACATGTAAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131679 lncRNA downstream 95301 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA downstream 103142 15391732 ~ 15396392 (-) True G105298
TU131695 lncRNA downstream 124771 15373347 ~ 15374763 (-) True G105291
TU131651 lncRNA downstream 176822 15298645 ~ 15322712 (-) True G105261
TU131635 lncRNA downstream 198683 15233703 ~ 15300851 (-) True G105249
TU131742 lncRNA upstream 33237 15535370 ~ 15569124 (-) True G105326
TU131866 lncRNA upstream 530118 16032251 ~ 16035023 (-) True G105427
TU131884 lncRNA upstream 541296 16043429 ~ 16048522 (-) False AMCG00011271
TU131897 lncRNA upstream 636966 16139099 ~ 16141338 (-) True G105454
TU131922 lncRNA upstream 733995 16236128 ~ 16237685 (-) True G105473
AMCG00011248 mRNA downstream 55409 15443190 ~ 15444125 (-) True AMCG00011248
AMCG00011244 mRNA downstream 134644 15361316 ~ 15364890 (-) True AMCG00011244
AMCG00011246 mRNA downstream 152570 15328336 ~ 15346964 (-) True AMCG00011246
AMCG00011245 mRNA downstream 204029 15282577 ~ 15295505 (-) True AMCG00011245
AMCG00011237 mRNA downstream 226906 15247192 ~ 15272628 (-) True AMCG00011237
AMCG00011261 mRNA upstream 300340 15802473 ~ 15937457 (-) True AMCG00011261
AMCG00011259 mRNA upstream 461232 15963365 ~ 15973845 (-) True AMCG00011259
AMCG00011260 mRNA upstream 472898 15975031 ~ 15977007 (-) True AMCG00011260
AMCG00011263 mRNA upstream 476564 15978697 ~ 15985898 (-) True AMCG00011263
AMCG00011265 mRNA upstream 484945 15987078 ~ 16000017 (-) True AMCG00011265
TU131692 other downstream 126355 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 1430973 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 1502945 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1820272 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 2132460 13365083 ~ 13367074 (-) True G104909
TU131862 other upstream 461205 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 461319 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 1456048 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 2227818 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 2249120 17751253 ~ 17751502 (-) True G105770

Expression Profile