RNA id: AMCG00011255


Basic Information

Item Value
RNA id AMCG00011255
length 2270
RNA type mRNA
GC content 0.41
exon number 7
gene id AMCG00011255
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15863032 ~ 15873489 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACATCCTTCCTGTGACTGTATTTTTCAGCTGAAATCTTGGAGCTGGCTGGAAATGCTGCTCGGGATAACAAGAAAGGGCGTGTCACTCCCAGGCATATCCTGTTGGCCATCGCCAATGATGAAGAGCTCAACCAGCTGCTGAAAGGTGTGACAATAGCCGCAGGGGGCGTCCTTCCTAACATTCACCCAGAGTTGTTGGCTAAAAAGCGAGGATCCAAGGGGAAGCTGGAAGCCATCATAACCCCACCTCCAGCCAAGAAATCCAAGACGTCACCTGCAAAGAAATCTACGGCAAAAAAGGCTGGGGGCAAAAAGGGGGCTGGAAAGTCCAAGGGAGAAGTGAGCAAAGCAGCCAGTGCAGACAGCACTACAGAGGGCACCCCAGCAGATGGGTTCACTGTCCTGTCCACAAAGAGCCTGTTCCTTGGGCAGAAGCTGAATCTTATTCACAGTGAAATCACTAACTTGGCTGGATTTGACGTGGAGGGTATAATCAATCCTACCAATGCTGACATTGACCTTAAAGATGATCTAGGTAATGCCCTGGAGAAGAAAGGAGGCAAGGAATTTGGGGAGGCTGTCGGTGAGCTTCGGAAGAAGAATGGGCCATTGGACATAGCAGGAGCTGCCCTGACTGCCGGCCACGGCCTTCCTGCAAAGTTTGTCATCCACTGTAACAGCCCAGGCTGGGGCTCAGATAAGTGCGAGGAGCTGCTTGAGAAAACAGTCAAAAACTGCCTGGCCCTAGCAGACGAAAAGAAGCTGAAATCCATAGCATTCCCCTCAATCGGCAGTGGCAGGAACGGCTTTCCCAAGCAGACTGCAGCCCAGCTAATTCTGAAAGCCATCTCCAGCTACTTCGTCTCCACGATGTCCTCTTCAATCAAAACAGTTTACTTTGTGTTGTTCGACAGTGAGAGTATAGGGATCTACGTGCAGGAAATGGCAAAGCTCGACGCTAACTAAAGCTTTGCCCGTCTTTCATCTAATTTGTTCATTGCTCAGTTCCTAATTTTATGACCCCACTGTGtcataaacacataaacattgTTTCACCATTCTTAATTTATTCTAGATAAATGAAAAActctttttattctttacaattTCCTAAAAATATGGTTGACACTGACAACTGGTTTAATTCTGCACTGTCCCCCCGggtgtatttgaaatgtttgtaattttggtattccttgatttattttaactgaaggGTAGAATGGCATTTCTAATGTTTGGAATATTTTGACCTTTGTGTGGAAGGGAAATGGCaggtacattttgtatttgtgctgtgCTACTTTATGTTGCACccactgtattttcttttccttttatttctttattgaaaCAGGTGCTACAATCTTTATGTTTATactatgtattattaatgttagaGATGGagtgtatgtaaaatgttttagtaaAATATGGGAATGTTGCTGTGGAATGTTTCTTGGCCATTGCTTTtcatcaaatgttttcttctaCAAAGACAAAAGCAcgatttaatttaaagttgcaTTGTTGACTGTAAGAGAGTTTCAGTCAATATTATCACTTTTTCATCAATTAGAATAACTGATGATTATGtgccatattaaaaaaaaaaaaatgtagcccagtgttctcaaacctgtcctagGGACAGCCCTAGCCCAGCTTTTTAATTAACCAACCAGCACTGGATTATTCCTGTTGATATCTGCACTGCTCAATTAACATTAGTGAGCTGTAATATTAGTATATTATACACAACATAAAATCAGTGTAGATATTTCAAGATACGATTGGATTAGTGTGATACACTGCTAATCAAATTTAGGCCTGAACCAAATCCAATTGTGCCCCATGCGCAAATCCCAAATCACAAACTTGTACCCTCTGGTGGTTAATTTATTGGCAGGAGGCACTTCCTAATActtataaataacacaatcagGTGCAGGTTAACACTTTGCAGTTGGCggataggtcaaagttttgatttggtctaggcctaaaTCGGACCATTCTAAGGCAGTGTCAGATAGTGAAGAATCATGTTCACATATTACCACAAGGGGTCACTGTATATCCAGTAATGATTGTCTGAAATTGTGACATTTTGCTCTAGGATGGTATACATGAGAGGGTCAAATGTTCTACTTTCTGCACTTCCCTCTCTTCCAGTAAAACTCTTTATTCTACTGCCTGGTAGTTAAGTATTGTATtggcatcatttaaaaaatatatctttaccacaaaataaatattgcaatatCTTA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131797 lncRNA upstream 1349 15859758 ~ 15861690 (+) True G105370
TU131789 lncRNA upstream 23934 15821308 ~ 15839105 (+) True G105365
TU131713 lncRNA upstream 375667 15472259 ~ 15487372 (+) True AMCG00011250
TU131624 lncRNA upstream 579291 15280455 ~ 15283748 (+) True G105238
TU131609 lncRNA upstream 606417 15249738 ~ 15256622 (+) True G105226
TU131802 lncRNA downstream 105200 15978689 ~ 15984079 (+) False G105373
TU131821 lncRNA downstream 122888 15996377 ~ 15997732 (+) True G105390
TU131877 lncRNA downstream 182676 16056165 ~ 16056449 (+) True G105434
TU131879 lncRNA downstream 189425 16062914 ~ 16063749 (+) True G105436
TU131881 lncRNA downstream 193744 16067233 ~ 16067442 (+) True G105438
AMCG00011252 mRNA upstream 7322 15853886 ~ 15855717 (+) False AMCG00011252
AMCG00011253 mRNA upstream 10655 15850701 ~ 15852384 (+) False AMCG00011253
AMCG00011256 mRNA upstream 36470 15825613 ~ 15826569 (+) True AMCG00011256
AMCG00011254 mRNA upstream 63546 15755286 ~ 15799493 (+) True AMCG00011254
AMCG00011257 mRNA upstream 198998 15649737 ~ 15664041 (+) True AMCG00011257
AMCG00011258 mRNA downstream 75150 15948639 ~ 15953777 (+) True AMCG00011258
AMCG00011262 mRNA downstream 157585 16031074 ~ 16033025 (+) True AMCG00011262
AMCG00011268 mRNA downstream 232161 16105650 ~ 16106386 (+) False AMCG00011268
AMCG00011270 mRNA downstream 246379 16119868 ~ 16124691 (+) True AMCG00011270
AMCG00011269 mRNA downstream 259963 16133452 ~ 16141505 (+) True AMCG00011269
TU131793 other upstream 7255 15853764 ~ 15855784 (+) True AMCG00011252
TU131792 other upstream 10650 15850646 ~ 15852389 (+) True AMCG00011253
TU131632 other upstream 540614 15320780 ~ 15322425 (+) False AMCG00011241
TU131514 other upstream 1242505 14619690 ~ 14620534 (+) True G105139
TU131073 other upstream 2919957 12942380 ~ 12943082 (+) True G104815
TU131803 other downstream 89851 15963340 ~ 15984079 (+) True G105373
TU132132 other downstream 1105003 16978492 ~ 16982241 (+) True AMCG00011293
TU132321 other downstream 1910674 17784163 ~ 17788050 (+) True G105778
TU132460 other downstream 3239421 19112910 ~ 19117369 (+) True AMCG00011328
TU132491 other downstream 3348566 19222055 ~ 19222421 (+) True G105916

Expression Profile