RNA id: TU131862


Basic Information

Item Value
RNA id TU131862
length 1790
RNA type TUCP
GC content 0.34
exon number 3
gene id AMCG00011259
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15963338 ~ 15973872 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACTTCAATGAAATCAAGTTGCAAACTAGTTAACCATGCGCCAGTTAATGTTTATACGCAACTGCAATTCTCTATTACAGAGCACTCTCTTAAAACATTGCAACACACTTCTACCCAGACACTCGTCCAAGATGGCCTCAGACTCGCAGTGGCTGTccccaggagagagagaacagctTCTACTGGAGTTGAAAGCGACAGGATGGGTGGAGGTGGAAGACCGGGACGCCCTTTACAAAGAACTCAACTTTAAAACCTTCAATCAGgtTCAGATAACACTGACATCTCATGACTGTGGCGGACTCtcaaaaaaagacattaaaatggCCAAGTTTATTGACAAAGTAGCTCTAACTAtgtagatttatttaattttgtgttaggTGGAAAATTAGATGTTGATAGAAATGTGACCATGTCTGAAGATTGTACAGCTTCGAAGAACAATGATCATTTTAGAAGACAACCTCTTACTATCTTGTGAAGCCGAGGAATATTTGGAGCTCCCTCTGGGTAACCACAGGTTGTGAGTGTTCCTGTAACACTTTACAGGAAGATGTGCGTGTTACTGATGTACAGTGACTGAAAGGCTTTGATTGTGGTCTCTTGTgacattatgatttattataatgtgaTCTGTAGCTTCTGCTGGTTATTATTGTCTACTCTTTTCCTGTTCCATCTATTAACatacaatgttacattttttgacttttgtttttggtatttagatttaataaataagaataacatGCCAGTGACTGAATTTCAGCTGTTGTAAACACAAGTGtaattctgctttttaaaagaaacGCATGCTTTTAACAAAATGGgatctggatgttttttttttttaatgtataaaaggttgtgtatttgtttagaaaggcagtttgtttaaaccacaaacacaatatattaaagATGTTTTAGCTCAGATATCTAGCATGCTTTCTTGTTAGTGGAAATATTTGCCTAAATGGCAGAAAGTATACTTGCACTTTAGCAGTGCTGGAAATCCTGTAGaataaaaagctctttgcaGTTATGAGGTTTCTCTGAATTTTGCACCTATGTTTTTCttgagtttagttttttcttcttctgtgctGCTTTGCATATTGCATCTTATCTTGCAATATCGTGCAAGTCACAGATTTGTATTAACAGCTCTGTAATACCCGCACCAAAGAACAAGGATACACTCTGTATTTAAAAGTTCAAAAACAAGATGAGCTGTTTTGCCCTCTCCAAATGCTGAAAACTATCTattaatgttgtaaaatgtcttCCTCTATAACAGTTATTCTGATCTTAAAATCATGTTGTCATTCTGTGGTGGAAATGAGGAAGTATACAATCCTGTTCTCAAATCTGGTATTCCTTAGCCATATGTGATTTTGTAAATGCAGTTTTaagaatactaaataaaaaactttttttaattgatgtttggatttttgttttatgctttttcGTTTATTAACTGAAATATTCTGTTATATTTAAATGGTATCAGTAAAAGGCAAATGGATaaatataggtttttttttttcacatgctCACTAAATTGAAGGTTCTTGGATTCAACAAGCTACACTTGATATCTGGTTACTATGTACTTTAAATTCTTAGGCTGTAATGAAAGGGATGGTAATATTAATATGCATCACTGTGTCATGGttcagtaaatgtttttgttttgtgttttttgcattttaatgttaatatgtGTAATACCGAAGTACAAACTTCTGAGCCAGAACAATAAAATGACGATGTATTAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131742 lncRNA downstream 394214 15535370 ~ 15569124 (-) True G105326
TU131679 lncRNA downstream 559105 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA downstream 566946 15391732 ~ 15396392 (-) True G105298
TU131695 lncRNA downstream 588575 15373347 ~ 15374763 (-) True G105291
TU131651 lncRNA downstream 640626 15298645 ~ 15322712 (-) True G105261
TU131866 lncRNA upstream 58379 16032251 ~ 16035023 (-) True G105427
TU131884 lncRNA upstream 69557 16043429 ~ 16048522 (-) False AMCG00011271
TU131897 lncRNA upstream 165227 16139099 ~ 16141338 (-) True G105454
TU131922 lncRNA upstream 262256 16236128 ~ 16237685 (-) True G105473
TU131928 lncRNA upstream 270824 16244696 ~ 16247301 (-) True G105479
AMCG00011261 mRNA downstream 25881 15802473 ~ 15937457 (-) True AMCG00011261
AMCG00011251 mRNA downstream 447663 15501001 ~ 15515675 (-) False AMCG00011251
AMCG00011248 mRNA downstream 519213 15443190 ~ 15444125 (-) True AMCG00011248
AMCG00011244 mRNA downstream 598448 15361316 ~ 15364890 (-) True AMCG00011244
AMCG00011246 mRNA downstream 616374 15328336 ~ 15346964 (-) True AMCG00011246
AMCG00011260 mRNA upstream 1159 15975031 ~ 15977007 (-) True AMCG00011260
AMCG00011263 mRNA upstream 4825 15978697 ~ 15985898 (-) True AMCG00011263
AMCG00011265 mRNA upstream 13206 15987078 ~ 16000017 (-) True AMCG00011265
AMCG00011266 mRNA upstream 26272 16000144 ~ 16004390 (-) True AMCG00011266
AMCG00011264 mRNA upstream 31100 16004972 ~ 16024749 (-) True AMCG00011264
TU131737 other downstream 461205 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 590159 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 1894777 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 1966749 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 2284076 13676131 ~ 13679262 (-) True G104929
TU132119 other upstream 984309 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 1756079 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 1777381 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 2025796 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 2210612 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile