RNA id: AMCG00011263


Basic Information

Item Value
RNA id AMCG00011263
length 5661
RNA type mRNA
GC content 0.37
exon number 2
gene id AMCG00011263
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15978697 ~ 15985898 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTTAAGTTCATGTAAACAGTGTCGGGGCTGCAGCTTAAGCAGCATTGCCGAGCTGATTAaaatttcagtgtttatttgctCTGGTGTTGCTGCAATTCCCAGCTGGAGAGACGCGCCTGCGCAGTTGTCCCCTCctgctttattaatttttaatggaaatggcTGCCTTTCTCATCTAAACCGATccgcaacaggaaaaaaaataaaatcccccgGAAAAAACCCCCATCTGATTGTTTTGCTGCTCCAAAGGGAAATACAAGCAGCGTCTGGTCGTCGATCGCTTGTGATCCGCTGAGAAAAATGACTCTGCTTTAGGATTTGAAGGATGCAAgatctatttttttttggtttttgtattTAACCCTTTGCATTCCATGATCTGCAAACAATCGAGATGATGCGCCAGGTTACCAGCAACACCAATGACTATTGCATGAGCGGCAGGGCGTCGTGCCTCGCCGAGGACAGCAGACACCCTGTCAGCCACTTCGAGCTATGTACCTCACAGTCCAGCAAGTTCTATCCTCCTCCGCCTCCGCCTCCCCTGCAACTACCACTGCCCCCGCTGCACCCTCCTCCACAGAACACCCTGAAACCCATGCCCTGCCAAAGGCAAGATGCCAGGAATGAACCCAACCCCCAGACAGTGGGGATCAAGAACGGCGAGAAGCCAGAGGactcaaagaaaaagaaaggccTGGGAAGATCCGGAAGGAGAGGCAGACCCTCTGGGACCACAAAGTCGGCGGGCTACAGAACCAGCACTGGGCGACCACTGGGCACCACCAAGGCTGCAGGGTTCAAAACAAGTCCGGGGAGACCCCTGGGTACCACCAAGGCTGCTGGGTACAAGGTGAGCCCTGGAAGGCCTCCAGGCAGCATCAAAACTCTGTCTCGTCTCACCAAACTGGGCTACGGATCCTGCAGCACGGCAGCATTCCCCTACTCAATGATGCACAAGAGAGCCCTATGTGAACCCTCTGGAAAAGAGCAGGAAACTAACGAGTAACGTCTTGCTTCCCTAATTATTGCATTGCTTGTAAGGAGTAAAGATTTGAGTGCATGTCCTAAGTGCTGTAGATTAAGGAGTGTGTTGTAATTtttcaacaaaagaaaaaaaaagaaaaagaaaaccttttttttttgattgacaCATACATCCACCATGTGAATGACTCAATCAAAACAATCCGTTTGatatatgatataaatatatgtagaaCATGTGtgttaaacagaaaaaataaaatgctatggTTATTGTTTCACagcagaaagtttttttttttgccacagGACTTCTTATATCAATGATTACCTTCACAGAAAAGTCATGTATCTAGAACTGATTTTCCTCTTGTTTGCTGTATCCTGTCTGAATTACATGTCAATTGCATGCTGACATTCACAAAAAAAGTAATCTCttaataaaaagcttttttgtttaaatcattattttagtCAATTTGGTGACTCATAAAGAACTTGCCTAACTTTAAAGCCTGGGGATATCTAGTGAAGAATGAGGAGGAATAATGTTTAGTTTCAGTCTCATTGGGAAGCATTGTGTCGATTTTATGGCAGAGATGGAGTCACTGTTAGAAAAAAGCAGCCTGATGGCGTCCTCTTGACTTTTTgtacaaaaagagagaaacttTTAATGCAGGTCATATGCCCATTTGTGTGTCAACACCATGAAATAATCATTACACGTATCTTGTAAAGTGGACTGACAGGTAGATAAGTGGATGGCATATGTTTTCTCCGTCATGCTGCCTCCTCCCTGgtgggaaaagagagagaaatgtcaTGTACCAGGAAGTATAAGCAAATGATAAAACACTCCATGGGCTTTATATCAACCGACATTACCCATCAAGACAATGTAGCAATAAAAGCAAGTGGTTTAAAGACTGCAACACTTTAATGTGGCTGAGGGTATATAGCAGAGTAGGGTAGTACCCACCATATCCCACATCTCCAACACTCACAGATATTCATTCCCATTGAAGGCAGTGGAGTATGACTTCTGTTGAGTACAGAATACAGTTCCCCCGTATTAATACTCTTGTTTTCCTGACTAAGATTTTATCTCATAATAATCTGTTGACCATTAGGGATTTGGACTGTTAGGTTTTAAAAACCTACTTCTGCAAGATGTATATAGTAGCTTTAGCTTTCTgatttgcaatatttatattcacGGAAGATTCCTAAagtgtttaaaattgtatacattgaattaaaatgcagtttgtgcCATTAGTCTAAGCATGAATTTCATAAATCCAGCCGTATATTCATCGCAGTATTTTGTcaattgttttgaaaaccttttcattttacaatcaGAAACAGAAGACTCGCAGCAGTATAGTTACACATAAAATATGAACAAGTTCAAAAGCATTCAAATCATTTGTATGAGGCTGATAAACTATAGTTGTAGGGAGATGCAAAGCCGTTTATCATAAGCAAGGTCTCTCTATACAAACAACATggtacattttgttatttttgatggCCTCTTTTTACTGCcatttgtgtgctgtttttctaAATAGTGCTGttgatattgtatttgtataacaaTTGTGAAAAGACCTTAAGCAATTTTATACTGCTGACAGCTCATGCTACAAAGGTGCTTTAATATTTGGGAATATGCtatcttttgtttgttattgagTCTTTCGAGGTTTCATCCGTACTGCCGTTTCAGCAGTACATGAAACATTattgtgttgatttattatttaaattgatttagaCTCCAGCACTTgctattaatatttaatcaattttatggcctactttatatgtatttgatttggTCTTTTCAAAGTTATTGGACTCCGTTTGATGTTTGTTATTCTGTTCAGTTCACCATCAGGGCCTCTGCACCACATGTCTCTAATTCTGCTCTCTTTGCCTTGTCATTGGTTGCCTCTGTCTGAGAAGCTGCATGCTTTTCGTGAACATGTTCTATTACACAGATATAAGAACACTGGTGTGTGCTAATGGGAGCCAGTGGATCAGTTAGGGGGCTGTACAGATTGTGTGTCATGTTATCTTGATTTCGCTGTGAACATCCCTGTGTGGGAGTGGGGCTGAAATCAGTACTGGAGTTCTAGAATTAAgccaaaaacataataacatttaCTGTATAATGTGACATTCACATAAAGCTGTACTTTTATACAGTCCATTACATCTAATTGTATTTCATGAAAATGGCttgttttctcttaattttACCTTAAATCCATTTTAGAAATGAGTTACATTTATCAATTCTGACATTGCCCCAGACAAACAGTTTCTAGCAGCATCGATGAGCTTGTTTGCGGGATATTATCAAAAACCAATATATTtagttatgtaaaatataataaaccaaTGCCTGGTCTGTATGTGGgagtgggtgtgggtgtgggtgtgtgtagtTTTGTCTGCTGTTTGTACTTTTCTCTCTAAATGCttttctcttgtgttttttaattatttattttcttcccactGCACACTCCCATACCTGATATTACTTGTCACCAAATACTAGATTGGAAGGGAATAGTGTTTTGCTAAAATGTAGAAGTTAGCAATATTGAAATACCAATTAAAGTGGGATAATAAAGGGATTTGGttgagttttttcttttctttatttgtagtAGTCCTGTGGCATAGATTTTGAGTGAAATATTTTGTCAGGTGTGcagggttatatatatatatatatatatatatatatataattttctcaCTACTCTGTTTTATAACTTTGTACAGCACTTGGGACTTTCTCCTCAAAGAACtcctcacattttcttttttttccgcTTTAAAGTTTTGTCCAAGCAAAGCGTTAACCGTATAGTAAAATGAATATGGAATGAAAGAATTCTAAATGttcattgaaaaaacaaacatgactcACAGAGGCTCTGTGAACGTCAATTTCCTTAGACCATTCTGTGTACTTTTTGTCTGCCCTTAACCAAAGAATCTGATTTAATCTGCCTCTTCAAACTAACAAATATGTCAGCTCACTAGGCAAAGTTACATGCATGGTAGCTTGGCCAGTcaagtaaaatgaaaaagacaaaaaaagctgaataaatatagaaattaaCCCTTTTCTTTATAAACTAGATTAAACCTTCTGTAACTCGAACAGAAAAAGAGCACTTAGTTACCTCTACTCTTTTTACTATAATCAAGAAAAATGAGATTctcctttttattaatttgttttttcagtaaaGATCATATaagttaataatgtattttaaaagataatatGTCAGTAtgctgtatatatgttttagatATTCTCTGTCTCTGGAGCTTTTCCAAATAATTAAGAGCCTATTGGGAATTAAATCAACAcctaagaaaacaacaacagtaatgtGATTAAACAAACCATTAATAAGCATTAACCACtgctttttctttacattttattttgcagtgctATATTGCTTTTTTGTAGTGCCTATATGTAGCAATGTCTCATATTTGATATAATGTTTATAAAGCTCATAtattcatgacattttattcatattaatatcaCCTGCCTTTTATGCTATAATGAAGAGGGGCTTTGTCATTAGCTAGACATTGTGAATTTACAATGTtcaatttatatgtattcaCTTCACTttcttgtatattattttgataaacTACCTGAAATGTTGAATAAGGTACTGTTTAGTTTTGATTTCAGTCTTTGTGAGTATAAACCCTTTGTCCACATCCTATGAGATCATCTGTGTTTAGTACCTATCATAGAAAGATCACTTATCAAATTTGTACTGATGTATGCTTGTTATGACACTGTATGttagaaatatgttttgtgaaTTAAAGGTCTGGTTTTAATCCAAATAGGTAAGAATGTTCTATatatagaaacaaataaacaaatatgagtAAATGGGACTGAACAACAGGTAGCATTCCAAAAACAACAGGACATTCCTGCTTGACTGACTTCAGTTTTATGAATGTAGGCATTTAATTAGTCTTTGTGCAAGAGCATTAAGAAGCACAAAGTTGTTCTTCTGAAGTATTTAACAGATGGAGACTTTTCGTTACAGTTGAGATGCTTAGAAAACAAGcaacaatacacacaaacaaaacaacaaaaatgtaagcaGAGTACATTACTCTCAGGACAGACCCATCTTTTAAGGAGGATAACTACATTGACAATGAGAACTATGTATGTAAAGTTTAAACAATGTTACTGtagaaacattgttttttgcCTCAGACCTATATTATAGTggcatttgttaatattttggAATTGCATCACATCCCCAACTGTATCTGCTGGGATCCGTCTGTTTTTCACCTGTCACAGATCTGCATGACAGTAGCAGAAATCCCCAAGACCTATAATGACCATATCCCTCCACAGTTATTTGATAAGGATTACTTTTCTTAATCCAGACACATCAGTCTTTGACTGCTGTTAAAATATTGCCTGGCTTAGGAAAATATGAAGCCCAGTATGAAGTCAGAACCACATTCAATGTAATTatgataaacaaaatataaattggaTTCCCCCCTTGTTTCCTTTTCTGCATGATTGTCAAGTGTGGAGAAAACTTGTGTAATAAACTTTAAATTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131742 lncRNA downstream 409573 15535370 ~ 15569124 (-) True G105326
TU131679 lncRNA downstream 574464 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA downstream 582305 15391732 ~ 15396392 (-) True G105298
TU131695 lncRNA downstream 603934 15373347 ~ 15374763 (-) True G105291
TU131651 lncRNA downstream 655985 15298645 ~ 15322712 (-) True G105261
TU131866 lncRNA upstream 46353 16032251 ~ 16035023 (-) True G105427
TU131884 lncRNA upstream 57531 16043429 ~ 16048522 (-) False AMCG00011271
TU131897 lncRNA upstream 153201 16139099 ~ 16141338 (-) True G105454
TU131922 lncRNA upstream 250230 16236128 ~ 16237685 (-) True G105473
TU131928 lncRNA upstream 258798 16244696 ~ 16247301 (-) True G105479
AMCG00011260 mRNA downstream 1690 15975031 ~ 15977007 (-) True AMCG00011260
AMCG00011259 mRNA downstream 4852 15963365 ~ 15973845 (-) True AMCG00011259
AMCG00011261 mRNA downstream 41240 15802473 ~ 15937457 (-) True AMCG00011261
AMCG00011251 mRNA downstream 463022 15501001 ~ 15515675 (-) False AMCG00011251
AMCG00011248 mRNA downstream 534572 15443190 ~ 15444125 (-) True AMCG00011248
AMCG00011265 mRNA upstream 1180 15987078 ~ 16000017 (-) True AMCG00011265
AMCG00011266 mRNA upstream 14246 16000144 ~ 16004390 (-) True AMCG00011266
AMCG00011264 mRNA upstream 19074 16004972 ~ 16024749 (-) True AMCG00011264
AMCG00011271 mRNA upstream 57473 16043371 ~ 16098179 (-) True AMCG00011271
AMCG00011272 mRNA upstream 124372 16110270 ~ 16114959 (-) True AMCG00011272
TU131862 other downstream 4825 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 4825 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 476564 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 605518 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 1910136 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 972283 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 1744053 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 1765355 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 2013770 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 2198586 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile