RNA id: AMCG00011264


Basic Information

Item Value
RNA id AMCG00011264
length 6147
RNA type mRNA
GC content 0.45
exon number 25
gene id AMCG00011264
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16004972 ~ 16024749 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCACGTTTCGGATTCAGTAGCCGAGCTGGTCCACCAACACAGAACCGCTTCTCCCAGGTGGCTCTGCTGTTCACAAGCTGTAGAGGCGTGTTATTCACCGAGCAGGCTGCTGTGGATTTGAGCCTGGTGTCAGTTTCAAGATGTCAAATTCTGGGTACAGCTCACAGAATGGTGCAGGACAGCCTTACGCCAATGAACCCAGTGGTGATGCAGCCACCAGGACAGGTGTACAACACTGCAGTCCAGCCTCCATACGCAAACCAGATGCCAGTCAAGGCGACTCTCCCTCAAGGTCCAGGACAATATAACTGCGGCACCTATCAGAGTGCACCCTCTGGGACCTTATCTCAGGGACCCGGTCAAGGTATGCTAAACAGGCCTCCAATGGGGCCACCACAGCCGCTGGCACCTCAACATCAAGCTGCTTCAGGTTCCAGAATGCCCCCACCACTAGCACCAGCCCACaattcaaccccccccccaccatctgCCAATCATTTCTACCCTGGGACCCAGAACCCACCTCAGTCAACCTGGCAATATGGCATGCCTCCTCCCATGAGTCAGGCTTCGGTGGGCTCTGTAACAAACCATGTGACCTCAGCACCCAGCTCTGTACCAAACCAACCTTCACCAGCAGGATATGGCATGGCAGGGTCCCCTGTCTATCACAATGCTGCACATCCTGGGCCTCCTGTCTCACACAACAGCTATAGTCAGCCTGGTCCTGCCCCTCCTCCAGTGAGCTCCTCTGCATCTCAGCTGTATCATCCTGGTAGACAAGCTTTTGGGCCTCCACCAGCAGGAGCCCTGACCCCAGGAATGAGACCCACACCGCCCCCTACTGGCTCCCTGGGCACTGCgaccccacctccccctccaACCTCCCAGCGTGAAGACGCTCATTGTGGGAATAGTGATAATAGCTTGGTTCGGGATGAGTGCCCCATGTCATCCCCCTCAGAGGACGATGATGAAGATTGTGATATTGAGCGCCCAGGTGTGGTCCACACACCCACCCCGAGTGACAGCGCGCAGGTCCCCAACAGCTTTGACTTCCTGGAGTCTGGGGGCAGGAACATGGCTCCATATCCACCTCAGCCTGCAATGATGGGCAGGTCAATGGGCCACTCGTATCCATCCTTACCCCCTGGATACCAGAATATGGGCACTCCCCCAAACGCTCAAGCAATGCAGCCTCCAAAACAGCCTTATCCCCTTGGACCTCAGCCATTTCAGCAGCCACCCGTAGGTCCTGGCCAGCTGACCCCTGCAATGGGAGGTTTAAGCCTGCAGCAGTCCCAGACTCCTGAATCCCTGAAAGCCATCAATCTCCTGCAGGAGCGCAACCTGCTCCCCCCTCGGCTGGTGCCTGCCCCAGTGCCCTGTCTGGCCCAGGACCTGCAGAGACTCAACTGCAGCCCGGAGGTCTTTCGTAGCACCCTGACCAACATCCCTCAAACGCAGTCTTTGCTAAACAAAGCCAAACTTCCTCTGGGATTACTTCTGCATCCCTTTAAAGACCTCTCGCAACTGCCAGTGGTCACCTCCAGTACCATTGTGAGGTGCCGCTCCTGCCGGACTTACATCAACCCCTTTGTGACGTTCCTGGACCAGAGGAGGTGGAAATGTAACCTGTGCTACAGAGTCAATGATGTTCCTGAAGAGTTCATGTATAACCCAGTGAGCAGATCGTATGGAGAGCCACATAAAAGACCAGAGGTTCAGAACCCCACAATTGAGTTCATTGCTCCTTCGGAATATATGttgAGACCCCCTCAGCCTGCTGTGTACCTCTTTGTGCTGGATGTATCCCATAATGCAGTGGAGACGGGGTACCTAAACATTGTCTGTCAGTCGATTCTGGACAATCTTAGTGCGCTTCCAGGGGACACCAGGACAAAGATAGGCTTTATAACCTTTGACAGCACCATCCATTTCTACAATCTTCAAGAGGGCCTGTCTCAGCCCCAGATGCTGATCGTTTCAGATATTGAAGACATTTTTATACCAACGCCAGACAGCCTTTTAGTAAACCTCAACGAGTGCAAGGAGAAGCTGGTGCAGGATCTGCTGAAGGGTTTGCCCCAGATGTTTACCAAGACCATGGAGACGCAGTCTGCCCTGGGACCCGCCCTGCAGGCTGCTTTCAAACTGTTGTCGCCCACTGGAGGCCGTGTCTCTGTCTTCCAGACACAGCTGCCCACGCTGGGGGTGGGTGCTCTGAAGTCTAGAGAGGACCCCAACCAGCGGGCGTCTGCAAAGGATATTCAGCACCTGTCTCCTGCCACTGATTTCTACAAAAAGTTGGCACTTGATTGTTCTGGGCAGCAAATTGCTGTAGATCTTTTCTTGCTGAGTGGACAGTACTGTGATTTAGCATCTttagCTTGCATATCCAGGTATTCTGCAGGCAGTGTCTACTACTACCCCTCATACCACAGCCAGCACAACCCTGCTCAGGAAGAGCGCTTTCAGAAGGACCTGAAGAGATACATCACCCGCAAGATTGGCTTTGAAGCAGTCATGAGGATACGCTGCACCAAAGGTCTTTCCATACATACCTTCCATGGGAACTTCTTTGTCCGAtccacagacctgctgtctCTGCCCAATGTAAATCCGGACGCCGGGTTTGCTGTGCAGATGTCCATTGAGGAGAACCTTGTCGATATGCAGGTGGTTTCTTTCCAGGCTGCTCTTCTGTACACATCAAGCAAAGGTGAGCGGCGGATCCGGGTGCACACCATGTGTCTTCCGGTTGTGAACTCGCTGGCGGACATCTTTGCCGGCGCCGATGTGCAAGCAATCACAGGACTGTTGGCGAGCATGGCTGTGGACCGCTCTGTGACGGCCAGCCTGAGTGACGCCCGCGATGCCCTGGCCAACGCTGCCATTGACTCCCTGGCTGCCTACCGCTCCTCTGTGCTCAGCGTCCAGCAGCCCGGCCTCCTGGCCCCTTGGTGTCTGCGCCTCTTCCCTCTCTATATCCTAGCCTTGCTCAAACAGAAAAGTTTCCGGACCGGAACCAGCACCCGTCTGGATGATCGTGTTTATGCCATGTGTCAGCTGAAGTACCAACCCCTCACTTATCTCATGTTAATGATCCATCCAGCTTTATACAGAGTTGACAATCTCTCAGATGAGGGCGCCCTCAATATCAGCGATAAGACCATCCCCCAGCCTGCACTGCTGCAGCTGTCCGTGGAGAAGCTCAGCCGGGAGGGGGCCTTCCTCATGGATGCTGGTTTGGTAATGTATCTCTGGATTGGAAAAAACTGCAGCCCCAGTTTTATCACCCAGGTGCTCGGAGTCCCAAACTACACAGCAATACCACAGTCTATGAATCAGCTCCCTGAATTAGACACAGCCGAGTCTGCCAGAACAAGAGCGTTCATCTCCTGGCTCCGAGAGCAGAGACCCTTCTTCCCAGTCCTACATGTGATAAGGGATGAGAGCCAGCTCAAAGCCATCTTTATGCAAAACATGATTGAAGACAGAACAGAATCTGCTCTGTCGTACTACGAGTTCTTGCTCCATCTGCAACAGCAAATTAGCAAATAAGAAGAATGCAGTAAAAACCCGAATATTATACGTGGTGTTGAGTGACGAACGACTGGATCAGCGACAAAGAGACAGTCTGCTTCTGCACAAGGGTCTGTCCTCAGTGACTTCAGTAGGGGCTAATCTTTAAAGTGTTTCTCATTGCCTTTTATGAAGACAAGCAAACAAGTGGGCCAACTGACGCTCACTACACTATTGGACTCTATCTAATAAATACAAGCTTATTTTTGGTAAGGGGTGGGGTAGAGGGGATTAATTGCTGAAGGAGCTTTTAGTAATAGCCTAAGCATATCTACAGCAATCCACAAAATCACAAGGAAAGGGGTTTGGAAATGGGTGCAAATCCTTTGAGAAACACCTGTAATAAAGAACTCTTTTCAGATGAAGGCAATGGGCATGAGGCTGTTTTGTTAAAGCACATTTCTGTTtcataataaagtaatatatgtattatatgcaTTCTGAGATAATATTGTCTGCCTGTCGGggtttattatttcatacttTATTGACTACAGAAGCAAACTGGCTGATAAAATTGTTTCTAAGGATTAGAAAAGTTAAACTTTTGAATTTTTTGGATCATGAACGATATCCCTTCTTAATGTTAGTtagcttaatttttttttttttttttttttaattctttaagtATGTATCGAACAAACATTTATGGCTCATCAGCAAATTGTGAGGAGATATCACGTTCAAAGTagtgtaaaaatattttacctTCTCTTCATTGATTGAGATGTTTTTCCTTCCGAGTGTGGCCATAGGTGGAGCacgtctcttttttttttaaattttatttatgaGAAGCCCTGTATTGGACTTAATTTTGTTATTACCTTGTATTGGAACTCACTTTTTATCATAAAACTGGTGTGTTTAATATACActatatgaaatattttaatataataggGTAATTTCTTTAACATTCATAGAATTAAGCCATTGTGATCTTTAATCTTGCTTTGTTGATTACAATATGTTTACATTGGAAAAACCCAGAATATAAAGGTaataaaatgttgatttcagtatatataaaataatgactgTGAAATTACTTTGGAAATAAAATGGGACTTTTTAAACTTAGTGATTGATTTATGCtatggggaaaagaaaaacaatgtgcagAGAAGTATCTTTTTCACAGGATAAAATGTTTGATTCAATCCAAAATAATGGTATGATGCTTATTCTCCagacttatatatatatgataaccACAATGTGCATTTTGACTGACGTCAACTGACGTTGTTTCTGCACTATACTCCACAACATTCTTTGATAGCTGTTGGTAATGTATGATGTGTTATATAGCTCAGCAGCCTACCTTTTGTGTCACTTGTAGCAGTCAGtaccttgttgttttttccttctatttcAGCTTGGCTTTATGGCCCCAGTAAATTGTCCCAATCCATATgcacagtaaaagtgtctggtCCTCAGAATATAGCCATTAATTGTGCGGTGTCTTGGAAAGCAGTGATAGGCTTATTAAGATACTGGGGTTTACAACTGAcctcatgttttaaaataatatgaaaaaatcTTCAGGAAGGGAGTGCAATGACTTTaaatttttatttctctttagtttgtgtgattatttttctttataaatcGGTAAGTTTTATTTGGAGATGTGAGTTTCTTAACTTTTTAAGCTACTACTAAATGTCCTCCCCACTAATTTAAGgctaatttaattttgctttattttttcattcaaaatctTGTCAGTATTGTTTGCAAACTGAGATTACAATGAAGGTGGGAGCCACTAAAATCTAAGACTTGGTTGTGTTGTATATGGAAAAACCCAATGAATGTACTATTACTTAAAGCAGTTAAACAACCACACTGTTCTTAGTAATAATGTTCTACACTGAAGTGAGTGGCAAGTTACAGTTTGTCTTTTAAGTAAGTTGGATATACTCAAATATGTTGTTACcaccattttaatttcttttcagctttaaaaagaatacagtaatctttgtttaaaaataaataaaattaccaTTATAAATACccttttaatgcttttttttaatcactctgacaaaaataaaatgaaaaagcataatgaacattttcagttattgGGACCATTTTATGTGGCTTGAAGTGAATATTCACAACTGAAGCCACCTGTGCAAGTATTACATAAGTTGCTGTTTTGTGCGtctcaataaaaatgtttgaagttttgtaaaacataagaaatatttttttgtccGCTCGTTAAACACCTCTTGTCAGAATTGGGCATGTTAATGCATAAGTTTGCTTCTGTGCCATTGTTTAAACCTGTTTTCTACAAGACTTTGATAACGCAAGACAATATATACTTGCACTGATGACTTCAGTTCTAATGATCTGTACAATGTAAACCCAGAAGAGATTAATTTTGTAAAGTAGTGTACATTACTGTAACAATTAAATACTAGTTCTCTATGAAGTTTGAAGATGTGTATTGATTGAGAGGTGTTGACCTGTGTTGTATTTGCTGTTTGTGAACATTACTAATTTACTTATGACATTGAGGGGATGGGG

Function

GO: NA

KEGG:

id description
K14007 SEC24; protein transport protein SEC24

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131742 lncRNA downstream 435848 15535370 ~ 15569124 (-) True G105326
TU131679 lncRNA downstream 600739 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA downstream 608580 15391732 ~ 15396392 (-) True G105298
TU131695 lncRNA downstream 630209 15373347 ~ 15374763 (-) True G105291
TU131651 lncRNA downstream 682260 15298645 ~ 15322712 (-) True G105261
TU131866 lncRNA upstream 7502 16032251 ~ 16035023 (-) True G105427
TU131884 lncRNA upstream 18680 16043429 ~ 16048522 (-) False AMCG00011271
TU131897 lncRNA upstream 114350 16139099 ~ 16141338 (-) True G105454
TU131922 lncRNA upstream 211379 16236128 ~ 16237685 (-) True G105473
TU131928 lncRNA upstream 219947 16244696 ~ 16247301 (-) True G105479
AMCG00011266 mRNA downstream 582 16000144 ~ 16004390 (-) True AMCG00011266
AMCG00011265 mRNA downstream 4955 15987078 ~ 16000017 (-) True AMCG00011265
AMCG00011263 mRNA downstream 19074 15978697 ~ 15985898 (-) True AMCG00011263
AMCG00011260 mRNA downstream 27965 15975031 ~ 15977007 (-) True AMCG00011260
AMCG00011259 mRNA downstream 31127 15963365 ~ 15973845 (-) True AMCG00011259
AMCG00011271 mRNA upstream 18622 16043371 ~ 16098179 (-) True AMCG00011271
AMCG00011272 mRNA upstream 85521 16110270 ~ 16114959 (-) True AMCG00011272
AMCG00011274 mRNA upstream 124987 16149736 ~ 16177066 (-) True AMCG00011274
AMCG00011273 mRNA upstream 173371 16198120 ~ 16199539 (-) True AMCG00011273
AMCG00011279 mRNA upstream 515908 16540657 ~ 16579592 (-) True AMCG00011279
TU131862 other downstream 31100 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 31100 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 502839 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 631793 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 1936411 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 933432 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 1705202 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 1726504 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1974919 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 2159735 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000014_01179004_01190266.mRNA True 2924 mRNA 0.61 20 CI01000014 1178989 ~ 1190266 (-)