RNA id: AMCG00011265



Basic Information


Item Value
RNA id AMCG00011265
length 3983
RNA type mRNA
GC content 0.48
exon number 23
gene id AMCG00011265
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15987078 ~ 16000017 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGGACGGCGTGTCTTGATTGCGTCATAAGGACGTCTGGGATTGTCGACTGAAAGCAGCGGTTAAGATAAAAGTGCGGGtcccaacaaaaataaactaagtgGTTTACTTCATAAAAACACGAGAAGATGGGAAGGGAGTCGAGGCACTACCGAAAGCGGTCGGCCTCCAAGGGACGCTCGGGCAGCCGGTCCAGGAGCCGCTCTGCAGAGAAGCGCTCCAAGCGTGAGGAGAGGGTGCGCTCACGCAGCCGTGACAGAGACCGCCGCAGGGAGCGCTCCCGAAGTAGAGACCGCCGGAGATCCCGCTCCCGTGACAGGAAGAGACCAAGacGCTCTCGGAGTCGAGAAAGGAGACGCTCTCGGAGTCGAGAAAGGAGGAGGTCTCGCAGTAGGAGCCGGGCTCGAAGATCACGCTCCACCAGCCCCAGTAAGAGCAGGAAGACCGAAGATGGGTCAAAGACTAAGGAGAAGTCTGAGAGCACAGAGCCTTCtgtggagaagaagaaaataaaggaggagaaagaagaagagaaggtTGAGGATCAAGACTTTGACCAAAATAAGCTGGAGGAGGAAATGAGGAAAAGGAAGGAGCGAGTAGAGAAGTGGAGGGAAGAGCAGAGGAAAAAGGCAATGGAGAACATTGGAGAGCTGAAGAAAGAGCTGGAAGAGATGAAGCAGGGGAAGAAGTGGAGCTTGGAGGACGACGATGATGACGAGGAGGAGGCACCACCTGTAGTGGAGCCCGAGGAAGAGCCCATGGAGGAGGTGGGCGAGGAGCAGGACCCCTTAGATGCCTACATGGAAGAGGTGAAGGAGGAAGTGAAGAAGTTCAATATGGGCAGCGTTCGAGGAGGAAACGACAAGAAGGGCGGAACAACAGTCACCAAAGTCATGACGGTCGTCACGACGAAGAAAGCCTCTGCTGACGCAAACAAGAAGAAGGGAGAGTTAATGGAGAATGACCAGGATGCTATGGAGTACTCCTccgaggaagaggaggtggaTCTTCAGACGGCCCTGACCGGCTATCAGACCAAGCAGAGGAAGCTGCTGGAGCCGGTGGACCATCAGAAAATCGAATATGAACCCTTCCGCAAGAACTTCTATGTGGAGGTACCAGAACTGACCAAAATGTCTCCAGAAGAGGTGAATGTTTACAGGTTGGAGTTGGAAGGAATCGTAGTCAAAGGGAAGGGCTGTCCGAAACCCATCAGGACATGGGTGCAATGTGGCATCTCCATGAAGATCCTAAGTGCGCTTAAAAAACATGGTTATGAAAAACCTACACCAATTCAGGCACAGGCCATTCCGGCTATAATGTCTGGACGTGACTTGATTGGGATCGCTAAAACTGGCAGTGGGAAAACAATTGCCTTTCTTCTGCCGATGTACCGCCACATCCTGGACCAGAGACCTTTGGAAGAAGCTGAAGGTCCCATAGctGTTATCATGACTCCTACTAGAGAATTGGCTCTTCAGATCACCAAGGAGTGCAAGAAGTTTTCTAAACCGCTGGGTCTAAGAGTGGTCTGTGTCTATGGGGGAACTGGAATAAGTGAACAGATTGCTGAGCTGAAGAGAGGAGCAGAAATCATTGTCTGCACACCAGGACGAATGATCGACATGTTAGGTGCCAATAGTGGCAGAGTCACAAACCTCCGCAGAGTTACCTATGTTGTGGTTGATGAAGCGGACAGAATGTTTGACATGGGCTTTGAGCCACAGGTGATGCGTATTGTGGACAACATCAGACCCGATCGCCAGACAGTCATGTTCTCGGCCACCTTCCCCAGAGCGATGGAGGCCCTGGCCCGCAGGATTCTGTCCAAGCCCATCGAGGTGCAAGTGGGCGGCAGGAGTGTTGTGTGTTCTGATGTGGAGCAGCATGTGATTGTCATTGAGGAAGAGAACAAGTTCTTGAAGCTTCTTGAACTTTTGGGGCATTACCAGGAGAAAGGCTCTGTTATCATCTTTGTGGACAAACAGGAGCACGCAGATGTGCTGCTGAAAGAGCTCATGAAAGTCTCTTACCCCTGCATGTCTCTCCATGGAGGCATTGACCAATATGACCGAGACAGCATCATCAATGACTTCAAGAATGGAGCATGCCGGCTGCTTGTGGCCACCTCTGTAGCTGCGAGGGGTCTGGATGTTAAGCACCTCATCTTGGTCATCAATTACAACTGCCCTAATCACTACGAGGATTACGTGCACCGAGCGGGACGAACTGGAAGAGCTGGCAATAAAGGGTTTGCCTATACATTCATCACAGATGACCAAGCCCGTTATGCTGGGGATATCATCAAGGCTCTGGAGCTCTCTGGGACTAGTGTGCCCCCATCATTGGAGCAGCTGTGGGCAAACTTCAAAGATCAACAAAAAGCTGAAGGTAAAAGCATCAAAAAGAGCAGCGGCTTCTCCGGAAAGGGTTTCAAATTTGACGAGACGGAGCATGCTTTGGCCAACGAGCGGAAAAAGCTGCAGAAGGCAGCCCTGGGCTTGCAGGACTCTGATGATGAGGACACTGCCTTGGACATCGATGAGCAGATCGAGAGCATGTTCAACTCAAAGAAGCGAGTGAAGGACCTGTCTGCACCGGGcgggggtggtggaggaggtggcggtgggggtgggggcagtgCCAACAGTGCAGGAGGAATGGCCAGTCCTGCGATGCCCTCTGCTGGTAACATCGAGAAGTTGGAGATTGCTAAGCGCCTGGCCCTGAAGATTAACGCACAGAAGAATCTGGGAGCCGAAGCTCAGGATGTGATGCAGCAAGCTACCAATGCCATTCTGAGAGGAGGCACCATAGTGGCACCATCTGTCTCTGCAAAGACCATCGCTGAGCAGCTGGCCGAGAAGATCAACGCTAAGCTCAACTACATCCCTGTGGAGAAACAagaggaggagaaacaggaTGCAGGACAGTCCGAAACCATCAAGAGATACGAGGAGGAACTCGAGATCAATGACTTTCCTCAGCCCAAAGAGGGAGAACGCAAAATCTACTTGGCCATCGAGAGTGCCAATGAACTGGCTGTACAGAAAGCGAAGGCTGAGATCACCAGGCTCATTAAAGAGGAGCTAATCAGACTACAAAACTCCTACCAACCAACCAGCAAAGGGAGATACAAGGTTTTGTAGAAGAGCTGGAATCTGAACAGAAGACATTCACAGCACTGCCATTTTATCTTCAGTCGTCAATTggatttgctttattttgtttttaattcggTATGATTTATAGATGGTTAAAGCTTTCAGCAGCAGATCTCTGGATGTCAAGCAgttctgttcatttttgttCTTAACTTTGTCTTTTGGTCCCCCGTTTTAATGTGCAGCTGTCTTGCtagatataatttattttaaatatctggtTTAGTTGTGTATTTTTGTCCTGATTCAGCACATATTTGGGGAACAGTGTGCTGATCTTACCTGTTTGGTCGAGGATCTAGAGGTttaaattcaaatgcatttaacaaaaTGATCTATTGATTCAGTTACACTATGGTGCAGACATACTCCTCAATCCCCGGTCACTGCATTTTCTAGGCTGTGTatgaagaatatattttatttaaagatcatATTTTCCTCTTCCAAAATATGTTCGTTTTGTTTCATTCTCATTCAGATTTTTGTACCTGTATAGTTTACCATAGGCATTTTTCTCACTTTTATTCATGCCTACCACAGCACCGAGGAATCTGTGGGCAGCTGAATtctgtgattttgtgtttttgaagttTTTATTGCAAATCTTGTAACCGTAGCAATTTGGATCAAGACCCGCTTGCAGCTCCTCTGAATATACTAtggaatacattgtttttaatttggttcCAGAATAAAATGTTCAGAATTCATATAATGGcaatgtggttgtttttttgtgtgcaacggatgtttttaaattttacttGTGTACATTTGCCTACAGGGGTAAAGATTAAAACAAGTTAGAAAGCACA

Function


GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0007420 brain development biological_process
GO:0072576 liver morphogenesis biological_process
GO:0015030 Cajal body cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12811 DDX46, PRP5; ATP-dependent RNA helicase DDX46/PRP5

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131742 lncRNA downstream 417954 15535370 ~ 15569124 (-) True G105326
TU131679 lncRNA downstream 582845 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA downstream 590686 15391732 ~ 15396392 (-) True G105298
TU131695 lncRNA downstream 612315 15373347 ~ 15374763 (-) True G105291
TU131651 lncRNA downstream 664366 15298645 ~ 15322712 (-) True G105261
TU131866 lncRNA upstream 32234 16032251 ~ 16035023 (-) True G105427
TU131884 lncRNA upstream 43412 16043429 ~ 16048522 (-) False AMCG00011271
TU131897 lncRNA upstream 139082 16139099 ~ 16141338 (-) True G105454
TU131922 lncRNA upstream 236111 16236128 ~ 16237685 (-) True G105473
TU131928 lncRNA upstream 244679 16244696 ~ 16247301 (-) True G105479
AMCG00011263 mRNA downstream 1180 15978697 ~ 15985898 (-) True AMCG00011263
AMCG00011260 mRNA downstream 10071 15975031 ~ 15977007 (-) True AMCG00011260
AMCG00011259 mRNA downstream 13233 15963365 ~ 15973845 (-) True AMCG00011259
AMCG00011261 mRNA downstream 49621 15802473 ~ 15937457 (-) True AMCG00011261
AMCG00011251 mRNA downstream 471403 15501001 ~ 15515675 (-) False AMCG00011251
AMCG00011266 mRNA upstream 127 16000144 ~ 16004390 (-) True AMCG00011266
AMCG00011264 mRNA upstream 4955 16004972 ~ 16024749 (-) True AMCG00011264
AMCG00011271 mRNA upstream 43354 16043371 ~ 16098179 (-) True AMCG00011271
AMCG00011272 mRNA upstream 110253 16110270 ~ 16114959 (-) True AMCG00011272
AMCG00011274 mRNA upstream 149719 16149736 ~ 16177066 (-) True AMCG00011274
TU131862 other downstream 13206 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 13206 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 484945 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 613899 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 1918517 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 958164 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 1729934 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 1751236 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1999651 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 2184467 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038042 False 3247 mRNA 0.56 23 NC_007132.7 45717930 ~ 45732177 (+)