RNA id: AMCG00011266


Basic Information

Item Value
RNA id AMCG00011266
length 2393
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00011266
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16000144 ~ 16004390 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGTCGCCTGGCTGCACAGTGCTCTTGTGAAACCTAATTTCCTAATTTTGAAACCATGCAGTCGTCTGAGGAAACCTCGCACAACGCTGCCGAAGAAAAGGGCAACATGTCTGCTTCGAAAAGAAGAGCAGAAATAAGGAGGAGAAAACTGCTGATGAATTCGGAAGACAGGATGAACAGGATCATGGGCTTCAATAAGAGCGACGCAGACAGCAACGATGACAGACATGCGACAGAGCTCAGAATCCCTCCGGATCACGACAGGGCAGAGGTCCTGTCCCTGTCGGCCCCGTCCAAGAGACTTCCGGTTTTCCAACATGAGATCGGGGACGCTAATCACCACATTGATGTTCCTGAAAGGAAGGGGTCCCCGCTACTGGAGGGCAGGGAGTCTCTTGCCCGGGGTTCGGAGAGTGATGGCGGTGCGGAGCTGAGGCAGAGGCCCCGGGGGGAACTCCCGGCCGACGGAGTCCCTCGCTCCCCACGCCGGGGCCTGCAGCAGTACTTATCGCGCTTTGACGAGGCCATGAAGTTGCGCAGCCAGCTGATCAGCGAGAAACCAGTCCAGGACAACGGCTCGGGCCCGGAGGAGATGGATGCCTTCCGCCTCTTCAGGCTGCTGGGCAGCGTGCTGCTGGCCATCGCGGTCAGGGTGTTTGTCTGCAAGTACCTGggggagaaaaaaatcagGACCACAGTATTGACGGCTGCCCTGCTGCTCTCGGGAATCCCTGCTGAAGTCATCAACCGCTCCATGGACACTTACAGCAAAATGGGGGATGTCTTCACTGACCTGTGTGTCTACTTCTTCACTTTCATCGTGTGTCACGAGATGTTGGTCCTCCTGGGTTCTGAAATCCCCTGAGAGTCTTGTGTTGCTCTGCTCGATGTGTGCTCCTCTAAATCCCCCGGCTGATGCAGTACatcaccccctcccctcccctcccttttCCAACAGTGCGAGTGGCGGTGAAAGACAGATGTCTGGACCGCATCGGCTCTGGAACAGTGTGGTTTCAATCGTAAACCTAACATTTCTCTTGGTTCCTTCCTGCACAGTGCTGCAGCAACAGCAGACTACTATCAGactgaactgaaatgtttaCTAGCATTTCCAGTTTGTAATGGTACTAGTGACGTCTGTTAATAGGTGGTGATGATTAGTCTCTGATTAAAAAGGGTTCCATTTTCTTACTCAAAGGAAAGGCTTTCTTAcatcttgtttttattccacACTAAGGAGCCATGTAAATCTAGATTTATTTGACTGTTCAGTTCTGCTGcttgtagtatttatttatttttatctattGTTTTATGGATGTGTTGTTCACTTTTTGATGAGCTTAAGAACGTAATTAACTCAAATGTAAACCCAGTGGTTGGAAGGTATACAGCGACACCTGCTGCTGTAAATTGCactacacaaaaaaaacaagggatATTAACTATGTACATGGTCTTTTTCAGTGAGCAGTGTCCTATTTTCAATATTGTGGTGGATTGTTTATGTTGGTATATTTAAGCTACATACTGGGCCAATATATATGGAGTTTCTTAATGGTAGACCAGCCTGGACAGGAGAGATTCCATCAAAGCAAAATGCTATGTCTAGCTGTACCAGCCGTCTAAACGAATGTAACTTACACCCCCGTTTTGGTAGCATGTTATCCAATCTGTTAAATCTACAATAAATTATTTCATCTGTATAtgggaaatatttaaatcagtttCAGTGTTGTAACCATTCATATAATCGATGTTCTCTATCTATCTGTGTTTTACTCTGTTTTACtacctgttttttaaattaaactgtaaagaGCAGGTAATTTCctaatttcatttgaaatgtgaatatCTGATCCAGTATAACCATTATTCAAAACCATGGAAGtgtaattgatttttttgtctATTATGGATGTATTCTTTTAATTATAGGAGTGGGTAAACTGGATTAACTGTACCTGAGAACAGACAGAACTGAATAAACTAATACAATAACAGACagcttttctttatatttagtGCTAAGAGAGgttcatgttaaaaaataaaggggGGGGGCATGAAAGAGATACTTAGACATATGCAACTGACATTAAAGAGAGAGACAATTGAGCGCTCTGGGTATCCACTTTCTAACGAGCTCTGAAGCAACAACATAGATCCTCTATCTAAAGTGTTTACGTAGTATAGAACAAGGTTAATTATTGGGAAAGGACAAAGATATACAAACTGTTTCTCATGACGTTTTCTAGTCGGAAATGCTGTTAGAGGAGTGATGATcatcatattaataacaaagtaGAGAGTGTGATTGgttgaacaaaacaatacaataaaactttGGAGTTACTATAAAGCTCTTGCAATAGAACAAGACTGC

Function

GO: NA

KEGG:

id description
K22385 CAMLG; calcium signal-modulating cyclophilin ligand

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131742 lncRNA downstream 431020 15535370 ~ 15569124 (-) True G105326
TU131679 lncRNA downstream 595911 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA downstream 603752 15391732 ~ 15396392 (-) True G105298
TU131695 lncRNA downstream 625381 15373347 ~ 15374763 (-) True G105291
TU131651 lncRNA downstream 677432 15298645 ~ 15322712 (-) True G105261
TU131866 lncRNA upstream 27861 16032251 ~ 16035023 (-) True G105427
TU131884 lncRNA upstream 39039 16043429 ~ 16048522 (-) False AMCG00011271
TU131897 lncRNA upstream 134709 16139099 ~ 16141338 (-) True G105454
TU131922 lncRNA upstream 231738 16236128 ~ 16237685 (-) True G105473
TU131928 lncRNA upstream 240306 16244696 ~ 16247301 (-) True G105479
AMCG00011265 mRNA downstream 127 15987078 ~ 16000017 (-) True AMCG00011265
AMCG00011263 mRNA downstream 14246 15978697 ~ 15985898 (-) True AMCG00011263
AMCG00011260 mRNA downstream 23137 15975031 ~ 15977007 (-) True AMCG00011260
AMCG00011259 mRNA downstream 26299 15963365 ~ 15973845 (-) True AMCG00011259
AMCG00011261 mRNA downstream 62687 15802473 ~ 15937457 (-) True AMCG00011261
AMCG00011264 mRNA upstream 582 16004972 ~ 16024749 (-) True AMCG00011264
AMCG00011271 mRNA upstream 38981 16043371 ~ 16098179 (-) True AMCG00011271
AMCG00011272 mRNA upstream 105880 16110270 ~ 16114959 (-) True AMCG00011272
AMCG00011274 mRNA upstream 145346 16149736 ~ 16177066 (-) True AMCG00011274
AMCG00011273 mRNA upstream 193730 16198120 ~ 16199539 (-) True AMCG00011273
TU131862 other downstream 26272 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 26272 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 498011 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 626965 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 1931583 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 953791 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 1725561 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 1746863 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1995278 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 2180094 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile