RNA id: AMCG00011272


Basic Information

Item Value
RNA id AMCG00011272
length 450
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00011272
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16110270 ~ 16114959 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTACCCCGGCCCGGAGACGACTTATGAGAGATTTCAAACGgCTTCAAGAAGACCCACCTGCTGGAGTCAGTGGCGCTCCatctgaaaataacataatgtTGTGGAATGCAGTTATATTTGGCCCTGAGGGTACCCCGTTTGAAGATGGAACTTTTAAGCTTGTGATAGAATTTTCAGAAGAGTATCCAAATAAGCCCCCGACTGTCAGATTCATCTCAAAAATGTTCCATCCGAATGATGGCAGTATATGTTTAGACATCCTTCAGaatcgctggagtcccacataCGATGTCTCATCCATTTTGACCTCTATCCAGTCTCTGTTGGATGAACCAAACCCCAACAGTCCAGCCAACAGTCAGGCTGCACAGCTTTACCAAGAGAACAAGAGGGAATATGAGAAGAGGGTATCTGCTATTGTAGAGCAAAGCTGGAACGACTCCTAA

Function

GO:

id name namespace
GO:0006301 postreplication repair biological_process
GO:0060135 maternal process involved in female pregnancy biological_process
GO:0033522 histone H2A ubiquitination biological_process
GO:0009411 response to UV biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I biological_process
GO:0001701 in utero embryonic development biological_process
GO:0001741 XY body cellular_component
GO:0005829 cytosol cellular_component
GO:0033503 HULC complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K10573 UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131884 lncRNA downstream 61748 16043429 ~ 16048522 (-) False AMCG00011271
TU131866 lncRNA downstream 75247 16032251 ~ 16035023 (-) True G105427
TU131742 lncRNA downstream 541146 15535370 ~ 15569124 (-) True G105326
TU131679 lncRNA downstream 706037 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA downstream 713878 15391732 ~ 15396392 (-) True G105298
TU131897 lncRNA upstream 24140 16139099 ~ 16141338 (-) True G105454
TU131922 lncRNA upstream 121169 16236128 ~ 16237685 (-) True G105473
TU131928 lncRNA upstream 129737 16244696 ~ 16247301 (-) True G105479
TU132017 lncRNA upstream 540288 16655247 ~ 16725153 (-) True G105553
TU132092 lncRNA upstream 779001 16893960 ~ 16895074 (-) True G105607
AMCG00011271 mRNA downstream 12091 16043371 ~ 16098179 (-) True AMCG00011271
AMCG00011264 mRNA downstream 85521 16004972 ~ 16024749 (-) True AMCG00011264
AMCG00011266 mRNA downstream 105880 16000144 ~ 16004390 (-) True AMCG00011266
AMCG00011265 mRNA downstream 110253 15987078 ~ 16000017 (-) True AMCG00011265
AMCG00011263 mRNA downstream 124372 15978697 ~ 15985898 (-) True AMCG00011263
AMCG00011274 mRNA upstream 34777 16149736 ~ 16177066 (-) True AMCG00011274
AMCG00011273 mRNA upstream 83161 16198120 ~ 16199539 (-) True AMCG00011273
AMCG00011279 mRNA upstream 425698 16540657 ~ 16579592 (-) True AMCG00011279
AMCG00011281 mRNA upstream 522337 16637296 ~ 16664404 (-) True AMCG00011281
AMCG00011283 mRNA upstream 549954 16664913 ~ 16699921 (-) True AMCG00011283
TU131862 other downstream 136398 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 136398 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 608137 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 737091 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 2041709 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 843222 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 1614992 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 1636294 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1884709 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 2069525 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile