RNA id: AMCG00011275


Basic Information

Item Value
RNA id AMCG00011275
length 3014
RNA type mRNA
GC content 0.35
exon number 2
gene id AMCG00011275
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16243327 ~ 16247084 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTTTAGGAGATAACGACAGTATCTCACCTGTGCCAGAACAAAATGGGAATGGAAATGAAACTGGAGACGTTTATGTGCCGAAACCAGACTCATCTTCAAATATCAGTATCACAGCCAAAGCCAACAACTCCATGCTATCTGAGGCCTCCTCCAATTCTTCTGTGAATTCCACTATCACTACTACCAGCACTGCTTCTACTACTATTAATTCTACTactactcctcctcctcctcctcctcaaacCACCCCTACAATTAGTACTAAGCTTTCCAGCAAAGAACCAATACCTACCACCCCTTCCACCACTAGTATCTCTGCCAAGGATGGAAATGACCCGGAGGGTGACCTGCATGAGTTTGACTCTGAGGAAGAACTTCGCTCCCCCTCTCCACATGAGGCAGACAGTGATGTAGATTACACAGAGCAACCAGCCTTTGATGACGACGATGACGATGACGACAAAGAGTTAAATGACAGCATTGATGGGTTTGGTGTTCTTGGCAACATAGACGAGGCCAAAATTGCTGTCAATGTTAAGGACACAACGATCTACGCTACTGAGGATGAAGACTCGCACTTCTTTTTCCACATAGTGATTATTGCCTTCCTGGTTGCCATTGTGTACATCACCTACCACAACAAAAGAAAGATTTACCTCTTGGCTCAGAGCAGAAGGTGGAGGGATGGACTGTGCTCCAGAAGTGTGGAATATCACAGACTGGACCAAAATGTCAATGAAGCCATGCCATCTCTCAAGATGACCAACGATTATATATTCTAGATGAAATGTAAAAACTCTTAACTTCCCATTTCCACGTGCAACAATCTACTCACGGGCAAATGGCATTTAATCTCGAGCTCAAAAGACAGCTCCTTGGTTGAGTTCCTTTTtgattcattatatatatagtctaaTAGCAGAGCACTTCACTATTTATAATGGCAGTGATAATGGTAGCGTCACGCCTCACATAAATCTCATTTTAAACCATACTTCTATTTAGGTAAACTATTCAGTAAACAAAATACTACTGTTGCAAATGTTGCATTCCTAATTCCTAGTTACTgccttatctctctctctctctctctctctccctgggtTTAAATGTGCATGCTTGCTTATTCCTAACCTTATACCTCGGTAGGCAgactatttataaaaaaaaaaaaaaaaaaaaaaaaaagtattttgttgaCTTTTTATGCTAGTTTCTTGAGACCTGTATTCCAAATTGACCATGTAGATTATTGTGTGTAATACTTGGAGACCATTGGGAAATGTACAGGAATATGAAGTACTTTTCTGGGTAAATATCAAATAAAGCACTGTTTCACCAAGCAGTAGTGAATTTAATAACAGAAGGCACATTGACACATTAAATGaccatgtttatttaatagtgaactgaaaataatgtattgcacaaacacacaccctgaAATAGCACTTGCTGAGAAACCTGCTATTCTGCTGTTAATTTGCTTAGCTTTCCAATTAAGAGCAAGataaaaaaagtgctttgtttgtggggaaaaaaggtcCTTGGTGTAATTACACGGGAGATTACTTAAATGGAAATgcacacaggaaacaaaatccAGGTGTAGAAACTAAACTCAGATGTGTTTGAGGATGTGAAATGTTAAAAGTACATATCATTACATAGTTTCAGTAGTTAATTATCCAACCAAGATGAGTCTTCATGTCTGTCCACATTCAGGGGCCTACCTCAaagtttgtctttttaatagGAGGTTTACTGGATTGCCATATCAGATTGGTAGAAGTCTATAAGTAAAGcctttacattttcacatggaGACATTGTTCTTATCTTAATAAGATTAAGATAAATTACATTGTCAAGAATTTGATTGCATATTCTGGCTAACCTTTGTACAGGTtcttattaaacaaatgtaattttctattcTATGCCCCCTTTTCAGGCGtcttattgcttttttttttcctgttatgctgcgtgtgtatataatatacacatacactatgcatacataaattataaaaaatgcgtccataaacaaaaaatatttttcaagcaTAGCTAAATGTATTTTCGTTATACTTAAATGATGGCTATTAGAAAGTTTGAGAGTCTCAGATTGATTTGtttactaatacaaaaatattcaaattaaggATGTTTCTTTGAGGTAATACAAGATGTTTGAATGCTGAATTATTTGCCAATGTGTCGGTCATTGAAGGAGTTTTGTGAAAGACTTCAGAAgtgcattgatttaaaaaaaaataaaaaaatccctaaATTACCTTGCATAATTTTTgcactttgaaatatttttaggTGGTTGGTAGTTAATCTAAAATCTGTATTGTCATACCAGAGAACATttaaatttctgttttgttttcaaactggCCTTTGCCAACAATATTAAGATGCCATGTTAATGAATATTCCTTTTTCAGTTTGCCATTGTATGCACTATTTtcatatgtaatttttttttcctcttgtgtAAATAATGCTGATTTGCAGTAAGGTGCATTATATTGCAAGTTTAACAGTTGTCATCCTTGTAAAGACCATATTTAGTTGTGTTTTAGCATGGGAAGGAACTCTTGTCATGCATGGTACTGTAATATAATGTCAGTAAGAAAATTTGCTTCTGGTTACatattgtaaacaaatgcaatggTTTTTTGACAATAAAGCACAATTGTACATGGGGCTTGTACTTATTAGTAGGCTGTCTctaatgctatttttatttttaattgtttgttgaCAGTTACTGtatttgatttactttattCTGGATGTATTTTATAGACATGCAGatacaatgatgatgatgataataaatctAAAGCATGGGTAGATATGATTtcctgcttttctgttttatagTAACAAAAGTGACTGATTAACAGAGAACATAGAGATAGGCGGCAGGAGATGAAGGTCTACTTACTAAAGGCTGATATTGTGATATTTAGAGATTTATTTGACTGTTCAC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131909 lncRNA upstream 43028 16200049 ~ 16200299 (+) True G105466
TU131891 lncRNA upstream 110340 16132758 ~ 16132987 (+) True G105448
TU131886 lncRNA upstream 132946 16105586 ~ 16110381 (+) True AMCG00011268
TU131881 lncRNA upstream 175885 16067233 ~ 16067442 (+) True G105438
TU131879 lncRNA upstream 179578 16062914 ~ 16063749 (+) True G105436
TU131997 lncRNA downstream 477604 16724688 ~ 16725153 (+) True G105538
TU132204 lncRNA downstream 1062675 17309759 ~ 17312068 (+) True G105684
TU132235 lncRNA downstream 1131536 17378620 ~ 17378860 (+) True G105715
TU132287 lncRNA downstream 1487906 17734990 ~ 17742387 (+) True G105756
TU132310 lncRNA downstream 1504166 17751250 ~ 17751484 (+) True G105769
AMCG00011276 mRNA upstream 2577 16233605 ~ 16240750 (+) True AMCG00011276
AMCG00011267 mRNA upstream 94413 16143839 ~ 16148914 (+) True AMCG00011267
AMCG00011269 mRNA upstream 101822 16133452 ~ 16141505 (+) True AMCG00011269
AMCG00011270 mRNA upstream 118636 16119868 ~ 16124691 (+) True AMCG00011270
AMCG00011268 mRNA upstream 136941 16105650 ~ 16106386 (+) False AMCG00011268
AMCG00011278 mRNA downstream 178930 16426014 ~ 16427017 (+) True AMCG00011278
AMCG00011277 mRNA downstream 205986 16453070 ~ 16471261 (+) True AMCG00011277
AMCG00011280 mRNA downstream 459243 16706327 ~ 16712776 (+) True AMCG00011280
AMCG00011285 mRNA downstream 501147 16748231 ~ 16755779 (+) True AMCG00011285
AMCG00011289 mRNA downstream 580092 16827176 ~ 16842696 (+) True AMCG00011289
TU131803 other upstream 259248 15963340 ~ 15984079 (+) True G105373
TU131793 other upstream 387543 15853764 ~ 15855784 (+) True AMCG00011252
TU131792 other upstream 390938 15850646 ~ 15852389 (+) True AMCG00011253
TU131632 other upstream 920902 15320780 ~ 15322425 (+) False AMCG00011241
TU131514 other upstream 1622793 14619690 ~ 14620534 (+) True G105139
TU132132 other downstream 731408 16978492 ~ 16982241 (+) True AMCG00011293
TU132321 other downstream 1537079 17784163 ~ 17788050 (+) True G105778
TU132460 other downstream 2865826 19112910 ~ 19117369 (+) True AMCG00011328
TU132491 other downstream 2974971 19222055 ~ 19222421 (+) True G105916
TU132810 other downstream 3848145 20095229 ~ 20162966 (+) False G106139

Expression Profile