RNA id: AMCG00011279


Basic Information

Item Value
RNA id AMCG00011279
length 6894
RNA type mRNA
GC content 0.46
exon number 24
gene id AMCG00011279
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16540657 ~ 16579592 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTCCCGGCAGATCTCACCAAGATGCACCTCACAGACAATCCCCATCAGCAGGTCATGCATGTCCCTCCAAGCCAATCAGGGTGCAGCATCGCCAGTGACTCTGGGAGCAGTAGTTTATCGGACATCTATCAGGCCACAGAGAGTGAGGTAGGCGATGTGGATCTGTCGGGCCTACCAGAGGCGGCAGTGGACtcggaagaggaggaggaggaggatgaagatATCGACCGGGCGTCAGACCCACTCCTGGGGAGGGATGTTGTACGGGAGTGTCTGGAAAAGGAACCAGCAGACAGAAGTGATGATGACATCGAACAACTCCTGGAGTTCATGCATCAGCTGCCCGCTTTTGCTAACATGACAATGTCTGTGAGGAGAGACCTGTGTACCGTTATGGTATTTGAAGTTGTTGATCAATCAGCAACAGTGATTCTTGAGGAGGGACAAGAActGGATTTGTGGTATGTCATTCTGAATGGTTCAGTGGAAATCACTCACCCAGACGGCAGGATCGAAACCCTCTGTATGGGAAACAGCTTTGGGATTTCTCCATCTCTTGACAAGCAGTACATGAATGGTGTGGTGCGAACCAAGGCAGATGACTGCCAGTTCGTGTGTGTAGCCCAGGAGGATTATTGGCGCATCCTGAACCATGTGGAGAAGAACACGCACaaagtggaggaggagggggagatcGTGATGGTGAAGGAGCACAGGGAGCTCGATCGCACGGGCACCAGGAAAGGACACATAGTCATCAAGGGAACTCCAGAGCGCCTTATAATGCACTTGGTGGAAGAGCATTCAGTAGTGGACCCAACATACATTGAGGATTTCTTGCTTACGTATAGGACATTTCTGTCCAGCCCCATGGAGGTCGGGAGGAAATTGTTAGAGTGGTTCAAAGTTGACTGCCTCAGGGACAAGGTTACACGGGTAGTGCTGTTATGGGTGAACAATCACTTCAATGATTTTGAAGGGGATCCCGCGATGACACAGTTCTTAGAAGAGTTTGAAAAACTTCTGGAAGCAGCAaaaatgaaaggccACCTCAGACTGCTGAATATTGCCTGTGCTGCAAAAGCAAAATGGCGGCAAATAACCCTGCTGAAGCCATCCAGAGAGTCTCCCCTCTACTTCAGCCTGCAGGGAGGAAGCGAGAGGGGGTTTGGCATCTTTGTCGAGTCTGTGGAACCCGGCAGTAAAGCCTCAGAGGCAGGACTCAAACGAGGAGACCAGATCATGGAGATTAATGGCCAaaattttgaaaacattactTATGCCAAAGCCATTGACATACTGAGGAATAACACCCATCTTTCCAttacagtgaaaacaaatatatttgTGTTTAAGGAGCTTTTAAGCCGGTTACTGCACGAAAAGAAGAACGGCGTCCCACACATTCCCAAAATCCAGGAGAAGAAGGGCAATCGTTACTCCATCCCAGACCTTCCGGGGGATGTGGAGCAGATGTTTCCTACAGAAAAGGGAAACAAGAAGATGAAAGCCAACACCGTGTCAGGCGGCAGGAACAAAATCAGAAAGATCCTGGACAAGACACGCTTCAGCATCCTGCCTCCGAAACCGTTCAGTGATGGTGGAGTAGGCCAGTCCCAAGATGACAGTATTGTTGGCACCAAGCAGTGCAGACACAGTGTTGCAATCATGCCCATCCCTGGATCTCTGTCGTCCAGCAGTCCTGACCTCCTGCAGCCCGCTACCAGTGTGCTGGACTTCTCCAATCCTGCAGACATTCCAGATCAAGTGATCCGTGTCTTCAAGGCTGACCAGCAGAGCTGCTACATCATCATAAGCAAAGACACGACAGCCAAGGATGTGGTGTCTCACGTCGTCAATGAGTTTGGTCTGCTGGCAGCCCCTGAAACCTACTCTCTATGTGAAGTCTCTATCAGCCCAGAAGGAGTGATCAAACAAAGGAGGCTTCCCGATCAGCTGTCCAAACTAGCGGACAGAATCCAGTTAAATGGAAGATACTACTTGAAAAATAACATGGAGACAGAGACTCTGTGCTCTGACGACGACGCTCAGGAGCTCCTGAGAGAGAGCCAGATAACCCTGCTGCAGCTGAGCACTGTGGAGGTGGCCACCCAGCTCTCTATGAGGGACTTTGACCTCTTCCGCAACATTGAGCCCACAGAATACGTGGATGATCTTTTCAAGCTGGACTCCTTGACCAGCAATATCCACCTCAAGCAGTTTGAGGACGTTATCAACCAAGAAACATTCTGGGTAGCCACTGAAATCCTAAAGGAACCAAACCATTTCAAGAGAATGAAGACCATTAAGCACTTCATCAAAATTGCTCTCCACTGCCGTGAATGCAAGAATTTTAACTCCATGTTTGCAATAATCAGTGGGCTGAACTTAGCACCTGTTGCTCGCCTAAGGGGATCATGGGAAAAGCTGCCAAGCAAGTATGAAAAACTCTTCAGAGATCTCCAGGACATCTTCGACCCTTCAAGAAACATGGCTAAATATCGCAATGTGTTGAGCAGCCAGAGTATGCAGCCACCGATTATTCCCCTCTTCCCTGTTGTGAAGAAGGACTTAACTTTTCTCCATGAAGGTAATGACTCAAGTGTAGATGGTCTGGTGAATTTTGAGAAGCTGCGGATGATTGCCAAAGAGATCCGCCATATGATCCGCATGACGTCTGCCAACATGGACCCAGCCCTGATGTTCAGACAGCGGTCTCTCAGCCAGGGCAGCACCAACTCCAATGTGCTGGATGTCCAAGGAGGGGCACACAAGAAACGCGTGCGTCGCAGCTCACTCCTCAACGCCAAGAAGCTGTATGAGGACGCGCAGATGGCACGCAAAGTCAAGCAGTATCTCTCCAACCTCACCGTGGAAACGGACGAGGAGAAGTTCCAGATCATGTCTCTCCAGTGTGAGCCTGCTTATAGCACCTTGTCCAAGAATTTAAGCGAAAGGAGGTCGGCCAAGTCGGATATGTCTCCTGTGTCCATGAGGTCCACACTTCCATCTGGAAAGTCCCACCCGCAGCACAGAATGAGCCAGGTCCTGCAGGTCCCTTCTGTCAACCTCTACCCACTGCGCAAGAAGGGGGCGTCCAAGGACATCGCCTCATTCAGTACTAGTTCTCCACAGTTTATTAAGAAGCCTGCCAGCACCTCTGAGGAGGTAAACATAAACGTAAACTGTAAACGTGGCACAGATGAAACCGTGTCTGCAGCCTCCTCCCTGCACTCCAGCCCCCCAGTCTCCCCCCAGGGCTCCCCTCGCAAAGGTGGGAATGCCCCCAAATCTCAGAACAACAGCCAGATGAACTTGTCGGGCTCTTCGTCCTCTCTGACAAGTGAGGCCAGCACCAAAACCAGCGGACACCGCAGCTACGGAATAGGTTATGCTCTGATGCCAGCGACGAAATCCGATAACTTCTCTGACTCGAGCCACAGTGAGATCTCCTCTCGCTCCAGCATCGTCAGTAACTGCTCAGTGGACTCCATGCCAGCTCCCACGTCAGAGGAGCGAGCCTTCAGTCAGCCCTGCGGTTACCCAGAAGGCAGTGGGGCcgcagacaggaaggacagcacACTGAGCATGGCTGATTGCAGCCAGCCCTGCACAAGttattCACTAGTAAGGCCAGCCGTCACAAGGGCGTCAACTTTCACGTCTTCTACGAGCAACGAAGAGCTGACTCCTGACCATGTCTCCATTGATACATCTGACAGCGGGCGGGGCAGCTGGACTTCATGCTCAAGCAGCTCCCATGACAACTTCCAGAGCCTACAGAGCCAGAGGGCCTGGGAGCTCGCCTCTTTCCGGCACACGCAGCTCGATGGGCCCATTGCGGAAGTGGAGCCAACAGGGCCTTGGATGGATGACCCAAATAAGAGGCATTCCAAAGACAGTTCAGAACTCAACCAGTCCAGGCAAAGCTGGGCTTCTTCCAGCTCCCTCTCCGACACCTACGAGGGGAATTACGGGACCATTAAGCGCCGTGCTCCCGAGAACTCGGCAGGTCCGCAAGGCGACGCTCCGGAGAGCAGCCAGAGCACAGACGCAGCTTACAAAACTGTCACTTCAAGCACAGACAAGGGACTGATAGTGTACTGTGTCACATCACCTCAGAAGGACGATAGGTATAAGGGTCCACCCCCCACTCCACCCGGATACCAGGGACTCTCCTTAGTGGATGTAAAGGAAGGAGGACCCCGCCACCCACACTTAAAACCTCCAGAGTATAGCGTGGCAGTGCAGaggtcaaagttgatgaaggcCCCCTGTGCCATTGCTTGCCAGCCCGAAGCTGTAATGCGTACGAAGAGACTAGCTCAGTGCCAGATGCAAACCCGACAAGACCTTGACTCTAGACTAGGAAGTGTTATTCTGCAGAGCCAACAGGATAGTGAGGATGATGAAGAGCAAGTGTCAGCCGTGTAGTTCTCTGAAAAGGTTCCCTGAGGAGTCCAGCACTCTCTGGACACCATCACACTGGACGATCAAACCTAGAAGTGTAGTAGAACATAAGCTAAACCAGCTTGCTGCTGTCTTTCCATGGAGCACATTTTTCCTTATCATTCATACAATgcaacaaagctgttaaacacaACTGCTCTGTATGTGTTGGGACTTGAACAGGACAATGAgaagaaacagaacagaaaatatatatttttaaatgatactagatttatttgatttttcatttttgtcaaaGCTGGGACCAGAGCATATCTTCAGTGACCATTATTCCCAAAATCATGTTGCTATGTTGGACACAAATCAACAGAGGGAATGGAAGAATCTTGTTATTAATTTCACTCTTCGGAATGGATTGGATGTTGTCTAACGACATCAATCATGGTTTTATACAAAAAGTATTAAGTGCTGCAGCACATTTTGTTGTGACTTTGACAAGCTGATATCTTTTAGGTTCTGCTGTGAACTATTGGACTGGTTAATGAAGCATAGTGCACATATAAATAAGTGTAGCAATCTTGTGCTTTAAGTAGCATGCTAATGCTTTACAAATGTGTCTTAGTGTGATCTGAACATTGTATACCCAGGAAGGGGACCAAGCAGTGATCGTTTTTTGAGAAGGTACAGGATTATGAGAGGTCTTGCTGATTTCTATAGTTTGACAGTCtaagacaaattaaatgtcagtgcatcttgtttattttgaatatatttgatgcctttttaatatgtagtttcaaaacatttacctGAGAAAACATCTCCAACCAATCTTCTGTGATccagaaaacacaatttgtaGTCACTGCAGGTCACAGATCTATAGTACAGTTGGCAAGATTCATTCATCGCAACGCTGCCATCTACCTGttcacagtatttatttcagtagttCGGACAACCCCAATAGACATCTGtgataaaagttaaatattgtttttatggcATAGACTAGCTTAACTAAGGGAACAATGACCTGGCCACGAGGATGAGGCCATCAGATCACCCCCCACCAGGTGGAATGAgcccaggagctgctgcaaaggtgCTATTtgggggttgtcctcctcccgaatttcagtttaaaactccattttGAATATTATGTCTCTATTAAAATTTGTACTAAATCCAACAGCAGACCAATCATAAGCAAATGGAAAAGCAAATGCCTTCTTTTCCAGTTGGGGAATCTCAATGCCGTAGCGACATTCTAATCGGTGTCCGAGTGTGACTTGTGTTAAAACTCCTGCTTTATCCTTTTTCtggtcaagatggaaaactgcaCAGCATCAACAAACGAAAAAGACGCACGAAAACTACAAACACATTGTTCGTAAAGCAGGATTGCTCACCACCTCTCCACGCTGGCTGATCTCCTTTATTTGCTTCATGTTATGTTGTACACATTTTAAGTTTGGATCCTGGAAAGACACAGGATTAACTCCTTCTTTCACATGCAAGTGAAGTAATTCAGCCGGTTCACTGAACACACACGGTGGCCCCATCAGGCCCTCTGGGGCTGGAGCTGGGAGTAACAGTGTTAGTGTAACATGTGGGCATATAACTGGAATATCTctgggttttcattttaatttgctgtggGTGCCCAaaatttttttttgcttgttacATCATACAAAAGACTTGAATATATTAAtggtaatatatacatatatatatatatatatatatacacacatctatatttttgttttattataaattaatgttgcTGACAATGTATAGATGAAAAAAGAACTATAAagactgtattttaatattttgttatactaaaatataaaattgaagGTTGTGATTGCCCTTACCAATTTGGGGGCAGGAATCTTAatgagaacatttattttacgtTAACTCAATGACTGAGTTTAAGTTTGAAATCCCATAGTTATTGTACAGagcttttttatgtattttgccgtcatttattttccctccctctgatttattgtgcttttatttatatgaagAGTACAAGAACCTCATCTTCTCATTGTACTGCTGTCCTCCGCTTCTTGTTGTAAAAGATGTACAGTAATTGGGTACAATGGGATGCTTCTGAAGATGAGAGCATGGAAGAGTGTCCCCAACAATGGGGGGGAAGGTTAGCCAGACATTTCACAACTAACCCAGCAgaagaggttttgtttttccccttctgttttcttttcttacctGTCCATAGTGTCATGAAGAATATCGGCTAACTGACCTCACACAATATCTAAGGTTAATAAGTAAGTGAAATGTTTTGGCACTGACACCAGCCCAATATCAAGCTGGTGACTTCTGAAATCTTTGCACATTCCCCAACAACCTTAACAAACAATTTAGTATTAACATTTGCCACAAACTTTTAAGAGagatcttaaatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K08020 RAPGEF6, PDZGEF2; Rap guanine nucleotide exchange factor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131928 lncRNA downstream 293356 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 302972 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 399319 16139099 ~ 16141338 (-) True G105454
TU131884 lncRNA downstream 492135 16043429 ~ 16048522 (-) False AMCG00011271
TU131866 lncRNA downstream 505634 16032251 ~ 16035023 (-) True G105427
TU132017 lncRNA upstream 75655 16655247 ~ 16725153 (-) True G105553
TU132092 lncRNA upstream 314368 16893960 ~ 16895074 (-) True G105607
TU132221 lncRNA upstream 730198 17309790 ~ 17312068 (-) True G105701
TU132276 lncRNA upstream 979810 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 979810 17559402 ~ 17561795 (-) False G105752
AMCG00011273 mRNA downstream 341118 16198120 ~ 16199539 (-) True AMCG00011273
AMCG00011274 mRNA downstream 363591 16149736 ~ 16177066 (-) True AMCG00011274
AMCG00011272 mRNA downstream 425698 16110270 ~ 16114959 (-) True AMCG00011272
AMCG00011271 mRNA downstream 442478 16043371 ~ 16098179 (-) True AMCG00011271
AMCG00011264 mRNA downstream 515908 16004972 ~ 16024749 (-) True AMCG00011264
AMCG00011281 mRNA upstream 57704 16637296 ~ 16664404 (-) True AMCG00011281
AMCG00011283 mRNA upstream 85321 16664913 ~ 16699921 (-) True AMCG00011283
AMCG00011284 mRNA upstream 166005 16745597 ~ 16746212 (-) True AMCG00011284
AMCG00011282 mRNA upstream 174064 16753656 ~ 16764495 (-) True AMCG00011282
AMCG00011286 mRNA upstream 196759 16776351 ~ 16804290 (-) True AMCG00011286
TU131862 other downstream 566785 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 566785 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1038524 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 1167478 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 2472096 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 378589 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 1150359 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 1171661 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1420076 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 1604892 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00039106 False 3126 mRNA 0.56 19 NC_007132.7 45054791 ~ 45077447 (-)
grasscarp (Ctenopharyngodon idella) CI01000000_04698746_04717749.mRNA True 6235 mRNA 0.49 23 CI01000000 4698041 ~ 4718908 (+)