RNA id: AMCG00011281


Basic Information

Item Value
RNA id AMCG00011281
length 3522
RNA type mRNA
GC content 0.50
exon number 18
gene id AMCG00011281
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16637296 ~ 16664404 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTCCGACGTTGTTTCAAaaactttttaataaaagaaatgCTTGCTCGCCGCCCCCGAAGTGCAGTAAAGAGGAGCAGACCTTCAGCTGGCCTTCTGGGGAGTTGGAACCAAGCCAGATCAGACTGATAGTGTATCAGGACTGTGAGAGACGTGGGAGAAATGTCCTCTTTGACTCCAACACCAAAAAGAAGAACACGGAAGAAACACCTGTTTCGAAGCTCTGCAGCGATGCCCAGGTGAAGATGTTCGGGAAGTGCTGTCAGCTGAGGCCCGCCGGCGGCAGCTCCAGCTCTCTGgacagctcctcctcctcctcggccTCGGAGCCAAAAGAGCCGGCTTCCCGATACCAGGGCTCCCGTTGTTCATCTGATGCCAACATGCTGGGGGAAATGATGTTCGGGTCTGTGGCGATGAGCTACAAAGGATCCACCCTTAAAATCCATCAGATACGCTCCCCTCCTCAGCTGATGCTGAGCAAAGTGTTTACAGCCCGGACTGGAAGCAGTGTTTATGGCAGCCTTAACACATTGCAAGACAGCCTTGAGTTCATCAATCAAGATTCCAATGCTTTAAAACCAGATCAGAACACTGTGGTGAACGGCCTCCTAGGGAATATAGGTTTTTCACAACTCTGCAGCCCCCGACGGGCGTTCTCTGAGCAGGGCCCTCTGCGTTTGATCAAGAGTGCCTCTTTCTTTTCAGGCCACAGTAATCCCATGGACATGCCTGGCAGAGGACAAAATGAAGAAAGAGATTGTGGGATAGCCAGATCAGCGTCTCTCAGCAGCCTGCTGGTCACACCGTTCCCCTCCCCGGGCTCCTCgctcagcagcagctgtgccaGCAGCTACCAGAGACGCTGGCTGCGCAGTCAGACCACTAGCCTGGAGAACGTGGAGGAAAGCTTTAATATGTCTGATGACAGTGGTGGTCCAAACCTGGGAGTCATGCGGAAAAAAAAGATAGCGATTGGCGTCATCTTCCTCCTGTCACAAGACGAAGAGGAAAGTAACAAGTTTCAAGACTTCTTCTTCTCTCACTTCCCACTGTTTGAAAGTCACATGAACAAACTCAAAAGTGCAATTGAACAgGCAATGAAAATGAGTCGTCGGTCAGCTGATGCCAGTCAGAGAGCTCAGGCTTACAGCCGCATTGTAGATGCTCTGAATGAATTTAGGACGACCATCTGTAACCTTTACACCATGCCTCGGATTGTGGAGCCTGTTTGGCTCACAATGATGTCGGGGATTCCGGAGAAAAACCATCTTTGTGGGCAGTTTATGAGGGAGTTTGCCTTTCTGATGGAGCAAGCCTCAAAGAACCAGTTCCTGCCAGCAATCCTCACTGCTGTCCTCACCAACCACCTGGCATGGGTCCCCACTGTCATGCCAAATGGACAACCGCCCATTAAAATCTTTCTGGAAAAACATTCCTCCCAGAGTGTGGACCTGCTGGCGAAAACACACCCGTATAACCCTCTGTGGGCTCAGCTAGgtgACTTATATGGTGCTATTGGTTCCCCAGTCAGACTGTCTAGGACTGTGGTGGTGGGCAAGAGACAGGATCTGGTCCAGCGATTGCTTTATTTTCTCACCTACTTCATACGCTGTTCTGAGCTCATAGAGACTCACCTGGTGGAAAGCGGCGAAGACGAGGCCATCGTCATGCCTGGCTCTCTCATTACAACATCACTGCGGAAAGGGGAGGTGGAGGACTCGGAGTATGTTCTTGTCAccatgcacaaacacagaagtGATTACCTGTCTCAAAGGCCCGACggggaagaaaaatatatttctggtAACGGCTGTCAAAGCAGCACGTACGCTGACGGAGCGTGTTTGGGGATGGACCGCACAAGCCAGGAAAAGGTCTGTAACCAAAGCACGAAGAGCAGCGTTCTCCAGTCCTTGTTTACTAAAAGCACTCTACCAATTATCCGCACAGAGGATGTCGGTGATCTGCAGCCATATAAAGAGAAGGCAACAAACCACTGCTTGGACACAAAGCTGGAGACAGTAGTCTGCGTTGGGTCTGCCTTGAGGGACCAAGGGTCAGTGCTGGAGGCCGCGCTGGAGCCGGGCGTTGAAGCCAGGGCTGCTGATGAGAAGGCAGAGGCTGGGAGCATGCCCATCAAAGTGTTCCGCTCCTCAGGAATACCACTGGAGAAAAAGCCACCGGATAAGAACCTGTCTTCCACCTTCAGGTGTGACGAGGAGCAGCCTTCCACTAAAGTGACCTTTTTGATCGGGGACTCAATGTCACCAGACTCCGACATGGAATCCAGGAGGCAAAAAGTAGAggaacaaataaagaaacaccGAAAGCAGCTGAAGGAGAAGCCGCAGGGTAGCAGTGAGCAGATGTCTAGGTCAAAGAACATTTCAGAGGACCAAACCAAGACCAATGTGACCAAGGAAACATTGCCCCGTGTGGCCAGCACTCTACCACAATGGGACCCCCCCTCCCAGGACATATGCATAGACTTATTTGATGAGTATTTCAATGAGGATAACCCAGTGGAAACCCGGACTATTGACGATGTGTTAAATAAAGAGGAATCGGACAGctcagacaaaacaaagaatgaGCTTTTGGATGCCTCGAAGAAAGACAGGGTTTTCCCTACTAATGAAGGCCAGAATGAACTGGACAACAGTACATGTTGTTGTGGTTCAATTGACGTCATGAATGGAGGCTTTTGTAGGAGTTGTTCTGCTGACCAGGACAGAGGAATTGTAATTTCAGTTACCGTCCCCCAAGGGGACACGATAGACCTGAAAAAGGCCACCCCACTTAATGAGTGGGAAATCCCAAGAAACGAGAGCTCGGACAGTGCCCTGGGGGACAGCGAGAGCGAGGATGCTGGTCACGACCTCCAAAGGCACGACAGCAGTTACTATGGAGAGGAACAGGAGGAATGGATGGATGAGGTGGAGATACCATTACCAGGgtCTAAATTAGTTGAGATGAGTTTCTCCAAGCCAAGCATTGCAAATTTTGGAAGGTCTCTGTTTGGTGGATACTGTCCGACCTATGTCCCCGACTTTGTTCTGCATGGGACGCCCAATGATGAGAAGCTTAAGCAATGCCTAATGGCAGATTTGGCCCATGCTGTACAGCATCCAGTTTTGGATGAACCCATTGCCGAAGCTGTCTGCATTATCGCAGACATGGATAAGTGGACGGTGCAGGTGGCCAGCAGCCAGAGACGAGCCACAGAGAACAAACTTGGCAAAGAGGTCCTGGTGTCCAGCCTCATCTCCAACTTACTGCAGTCCACTCTGCAGCTTTACAAGCTCAAACTGTCACCCAACTTTTGTATTATGCACCTTGAAGACAGACTGCAGGAGTTgtatttcaaaagtaaaatgcTTGCAGAATACCTGAAAGGACAGACAAGAGTGCATGTGAAAGAGCTTGGAATGGTACTAGGGATCGAATCCAGTGATCTTCCTTTGCTGGCAGCGGTCGCAAGCACTCACTCTCCACACGTGGCCCAGATATTGCTGTAG

Function

GO: NA

KEGG:

id description
K20400 FNIP1; folliculin-interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131928 lncRNA downstream 389995 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 399611 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 495958 16139099 ~ 16141338 (-) True G105454
TU131884 lncRNA downstream 588774 16043429 ~ 16048522 (-) False AMCG00011271
TU131866 lncRNA downstream 602273 16032251 ~ 16035023 (-) True G105427
TU132092 lncRNA upstream 229556 16893960 ~ 16895074 (-) True G105607
TU132221 lncRNA upstream 645386 17309790 ~ 17312068 (-) True G105701
TU132276 lncRNA upstream 894998 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 894998 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 899765 17564169 ~ 17566963 (-) True G105761
AMCG00011279 mRNA downstream 57704 16540657 ~ 16579592 (-) True AMCG00011279
AMCG00011273 mRNA downstream 437757 16198120 ~ 16199539 (-) True AMCG00011273
AMCG00011274 mRNA downstream 460230 16149736 ~ 16177066 (-) True AMCG00011274
AMCG00011272 mRNA downstream 522337 16110270 ~ 16114959 (-) True AMCG00011272
AMCG00011271 mRNA downstream 539117 16043371 ~ 16098179 (-) True AMCG00011271
AMCG00011283 mRNA upstream 509 16664913 ~ 16699921 (-) True AMCG00011283
AMCG00011284 mRNA upstream 81193 16745597 ~ 16746212 (-) True AMCG00011284
AMCG00011282 mRNA upstream 89252 16753656 ~ 16764495 (-) True AMCG00011282
AMCG00011286 mRNA upstream 111947 16776351 ~ 16804290 (-) True AMCG00011286
AMCG00011292 mRNA upstream 245916 16910320 ~ 16920194 (-) True AMCG00011292
TU131862 other downstream 663424 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 663424 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1135163 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 1264117 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 2568735 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 293777 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 1065547 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 1086849 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1335264 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 1520080 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile