RNA id: AMCG00011282


Basic Information

Item Value
RNA id AMCG00011282
length 3451
RNA type mRNA
GC content 0.43
exon number 13
gene id AMCG00011282
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16753656 ~ 16764495 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGAGAGACTACGACCAAGTCACAGCTTTCCTGGGGGAGTGGGGCCGCTTCCAGGTGATGGTCTTCTCTCTGCTTTGCGCCAGCACGGTTCCCAATGGATTCAGCGCCTTTTCCGTGGTGTTCCTGGGGGACACGCCACCCCACCGATGCCTCATACCCGACAGTGTCAACCTCAGCGCTGAATGGAGAAATGCCTGCATCCCCGTGGAGCAGGTGGACGGGCAGGTGCGACGCAGCTCATGCAGGAGATACCGTCTGGACGTGGTCAGAAACCTGTCCGCTGTCCACCAGCGCCCGGGTGTGGACGTCAATTTTGATCTTGTGTGCAGCAATCAATGGAAAGAACCTCTCACCTCCACTGTGTACTTTCTGGGTGTACTTTTTGGGTCCTTCATCTCTGGTCAGCTCTCTGACAGGTTTGGAAGAAAACCCATTCTGTTTGTGACAATGGCAGTTCAGACCGTCTTCACATTCATTCAGGTGTTCTCTCCATCCTGGGAGGTATTCTGTATCATATTCTTCATTGTGGGACTGGGTCAAATCTCCAACTACGTGGCAGCATTTGTTTTGGGTACAGAAATACTGATCAAAAATGTGCGTGTCCTTTACTCTTCCCTGGGagtgtgtattttctttgcatttggaTACATGATGCTTCCTCTCATTGCCTTCTTTATACGAGACTGGAGGATGCTTCTCATTGCCTTATCTGTGCCCGGTCTTTTATACATCCCTCTGTGGTGGTTCATCCCCGAGTCCCCGCGGTGGCTGCTCTCTCAGGGCAGAGTGCAGGAGGCTGAGGCCATACTGCGAAAGGCTGCCAGAATGAACAAGGTCACCCCCCCTGATGGCGAAGAGAAAAAAACGAATAAAGAGGATAACCATAACGTCCTTGATCTTCTGAGAACAAGTAACATCCGCTACATTACAATCATATTGTTTCTTGTGTGggGTACTGTAAGTATGGGATACTTTGCTTTGTCGTTGAACACATCCCATCTACATGGAAATCCTTACCTCAACTGTTTTATCTCTGCTGCCATTGAAATCCCTGCCTACACAGTCACCTGGGCATTTCTGCAGTTTTTACCAAGAAGAGTGTGTGCTCCAGTTAGTATGATTCTTGGTGGAGGTGTACTTTTCTTCATTCAGCTTGTACCTCCAAGTTTACCCATTGTGTCAATTGCACTGGAGATGGCAGGAAAATTTGGAATGGCTATTGCAACAGCATTAATGTTTGCCTACACAGGAGAGCTCTATCCCACCGTGCTGAGAAACACTGCGGTGGGCTCCTGTACCATGGTGTCCAGAGTTGGCAGTGCCATTGCTCCCTACTTTATCCACCTGAGTATATTTTACAAGTACCTGCCCTACATTGTGTTGGGAGCTCTCACAGTCTCTGCTGCGCTACTCTCACTGTTACTACCGGAAAGCTTTGGATTGCCCATGCCTGAGAGCATTGGCCAGATGCAGAATATCAAGTGTTTGAAACTgagaaatacatcaaataaaacctCAGGCCATGAAGAAATAAGCACTCCTGTAGTCCTTAAAGAGGAGGCACTGTGACCGTGACATTTCAGCAAATAAGCTCTTCCTTTCAACTTCTGCCCAGCACTGTTGATATACAACTTTTGGTGCCAATATcttaattatctttaaaaaattatgaattaaagatTATGAAACACGTTTTAATATTTCAGAGTATGATATACACTTcatgatttgtaaaatgttctcCTCATTATTAATGGCAATACCCATATCGCACTCTTGGTGTGCATGTTGTCTAGCCAAGCTTCCAGGGATCCACTTAAACCTCAgtgtttccatttcaaacaGCAGCTTCCTGTCAGTCGAGTCTGTAGTATAGGCATAGACTATCTTTTGCCTGCATCAGCAGTTTATTATTAGGTTATTGTGCATCTCCCGGCATTGAATCATTGTGAGGTAGGGCTGCCAGTTATTTGATTGTTGTGCCAAAGTGTCAGTGTCTGAATGATCCAGCTCAGTCACAGTCTCGCTGACATTAAAACATCTGGACTGTCAAAATCCCCTCCAGCTGTATGGTTATGGTTATAAAGagtctttctctttttaaacctgaagagaagaaaaaaatactaattgacatgattttcaaaacaaactggGAAAGCAAAAAGGTTTGGTTCGATAAATCATTTCAGAGACCATCATGTGTAGAcactataacattttaatatcactggAGATTTGAGTATTTTTTCCCCTACAgttttataaatgaatatgtGTCACTTGACAAAATAAAGGCGAAATGGCCATCCAATTAGAACTAATTCAGGAAGACACCAGGCCAAGTAGCATAATAGTAAATAGTGTACTCACttattgtaaaaatgttatcaaatcCCAATGCTGCTATTATTCAAATTGTTATATTGATAGAAAAGCCCTTACCCTTTTATATGTTGCATCTGATCAATAGTCTCAGGGAGCGGCACTCCAAAACTTTCAGGTAAGAGAAGAGCAAGCACCCCTGCAATAATGGTGAGGCTTCCCATTAAGATGTAAGGCAGAAACTTGTCGAATTTTCCTGTAAAACACAAGTAGATGCTGTACACCAAGACAAGACAGTGCCTTtcagaaaattaataaacagtgtGTGGGGAAAAGCCTATCTTTCAGATTCAGAGGAATCctttttttaacttgtaattgtaagttgaattaatgcttaatttgaatttgtattgaattgtattactgcacttttgtaatgcctGTGTATCCtgcaagtcaccctggataagggtgtctgccaagaaataaataataaaaatataaaccctGTAAATGAGAAAGTCAGTGGAAGTGTCCCAGGATGGCTTACCCAGGAAGACAAAGTAAGGGGCACTGATGCTGCCTATTCTGGAAGCCATGGAACAGACTCCGACTGCCATGTTCCTCACTACAGTGGGGAAGAGTTCTGCGGTAAAGGCATAAACTATGGCAAATGCAGATGTAAATCCAAACTTCCCCAGCATCTCCATTGCAACACATAATGCTGTTAAATCTGttgaatacacataatttctTACCTTGTGGAATAAGCTGAATGAAGAGAAGCACTGTTCCACCTTGAACAAGCATGAAGAAGAGAGAAAGTCTCCTAGAGCAATTTTGAAGCAACAGCCAAGTAGCAATATAGGCTGGCACTTCAACTGCCCCAGAGGAGAAGCAGTTAAGGTAGATGTTTCCGTGTAAACTGGAAGTGTTCAGTGATAAGGCAAAGTACCCAATGGATAGTATCAtcCACACAAGGCAGGACAGAATCGTGATGCAGCAGATGTTTCCACTCCTCAGAAGGTCTAGGATGGTGTGCACATGTGTTTCTTCAGACTTATTGTCTTTAGGCTGCACAGGCTCAAATATGATGTCAGGGGGGGTGACCTTGTTCATT

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K08202 SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132017 lncRNA downstream 28503 16655247 ~ 16725153 (-) True G105553
TU131928 lncRNA downstream 506355 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 515971 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 612318 16139099 ~ 16141338 (-) True G105454
TU131884 lncRNA downstream 705134 16043429 ~ 16048522 (-) False AMCG00011271
TU132092 lncRNA upstream 129465 16893960 ~ 16895074 (-) True G105607
TU132221 lncRNA upstream 545295 17309790 ~ 17312068 (-) True G105701
TU132276 lncRNA upstream 794907 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 794907 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 799674 17564169 ~ 17566963 (-) True G105761
AMCG00011284 mRNA downstream 7444 16745597 ~ 16746212 (-) True AMCG00011284
AMCG00011283 mRNA downstream 53735 16664913 ~ 16699921 (-) True AMCG00011283
AMCG00011281 mRNA downstream 89252 16637296 ~ 16664404 (-) True AMCG00011281
AMCG00011279 mRNA downstream 174064 16540657 ~ 16579592 (-) True AMCG00011279
AMCG00011273 mRNA downstream 554117 16198120 ~ 16199539 (-) True AMCG00011273
AMCG00011286 mRNA upstream 11856 16776351 ~ 16804290 (-) True AMCG00011286
AMCG00011292 mRNA upstream 145825 16910320 ~ 16920194 (-) True AMCG00011292
AMCG00011291 mRNA upstream 170011 16934506 ~ 16935842 (-) True AMCG00011291
AMCG00011290 mRNA upstream 179437 16943932 ~ 16960912 (-) True AMCG00011290
AMCG00011294 mRNA upstream 214103 16978598 ~ 17004504 (-) True AMCG00011294
TU131862 other downstream 779784 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 779784 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1251523 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 1380477 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 2685095 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 193686 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 965456 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 986758 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1235173 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 1419989 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile