RNA id: AMCG00011283


Basic Information

Item Value
RNA id AMCG00011283
length 4982
RNA type mRNA
GC content 0.44
exon number 30
gene id AMCG00011283
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16664913 ~ 16699921 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttagttacacaaaacaaaaacacgtattaaattaattgtaattttacagAACTTAAACCAGTTAATTACTCTGGGCCACTTTTTTCAAACGTATAATGCAATGACACATACATGCAATTTTTAGAATGAGCACTACATGGAAATATACACCAATGGAAATATagtaaaattgtgaaaaatgtctACTCAAAAATGTCTTGATTTGTGGAAAGGACCACAAGTCTGCCGCCAGGGTATGTCATACACCAGATTGGCCTGCATGTCTGTTGACTGAACAGAAAATTCAAATGTAGaaggtaaaacatttaattgacagTTGTTTCACATTGCAGTACTTCAAAGAAATATTGTTCTCAATGGAAAGCCTTTCTTTTTATGTTATGACAAACCATGTCTTAATTAGCATATTCCAGTATGTTTCAGAATTCCCCATTAGCACAGTTCTTTAAACTTTGATTATAACTCATCGCACGCTGGGGGGGTTAACATATGTACAATTATTCATACTGTCTGTTTGTCCTTGATTTGTATCATTGCAGTTTGCACGGTTCTTCCTCTGTGCATAATTACTTGTATTTCTGTGATCATACTGGACGATGTGTATCCcctttatatttatacagtcAGGAAATAAAATCATTCAGTTATAACATGGCCTGTAAAAGACCGGAAGAGGCAGCTGCATGTTTCTGACTGTGAACCAGCTGAAAGGTCAGTCACATGATCTCTCTGGGAAAAGACAATTCAGTTAATATCAAAGCTGGCTTGTTGCACAGATAAATTACACACGTTTAAAATAAGTGCATTGTGTAAAAACACAAGTGTTGGATTATAACAAAGGAAAAGATTACgagcaaaaatgaaaaacatttacaaattgaATAGGAGGATGTGGTTTGCAGGTGATAGTTTGCACAACGAATATGATGAATTAGTCAGAGAAATTGGATTAGGGTTTCTTTATTCACCTGTGATTTGTGAAATGTTACACATGTGTAATAGTCCTTCCAGTAAGCATCTGTGTGGGAGTGAAACCGTTTCATTTTAACTTTGTGTTATAAAAGATTTGCAGGCATTGTGGTCATCCAAGTAAAATATAGTGTTTGTACCAAGACACaggaaactgaaaaagaaatctCAGCTGCAGATACACTACACAGTCGAAACTGGTAAAATGGTGCTACAGAATAAGATACAGTATGGAAACCGGATGCAAATCATCCCATCACCTTGTCCCGACCGCCTGTCACCTTCACATGAACTGATGGGATAATGTGGATATTAAAGCTACATGTATCGGTAAAGATATATaccaatataaaacaataacacaccCCTTACCAGTCGATATTCAATACTGCTGCTGAATTATACGGATCAAAGAAAACCCCTGGCATCCCCACGACAGCCCGGATTGACCAGCTCAGTATTACTCAGTGCTTCTGCTCTAATCTCCCAGATTGTCCCAGAGCTGCTGCAGTCCAGCCTGTGCTGCAGTCCTCCAGTCCTCCAGTCCTCCAGCCTCCATCTCCAGGCTTTCTGCTGCTGCAGCAAACTcaagcacagacacagagagatgctTGCCTTCCTGCTCGTTTCTGGGTCTATTTGGATTGTGCTAGAGATCAGTAACACGCTGATGGAGAAGATGCAGGCCCAGGAGATTCTGCGCAGTCTGCGGTTGCCGGAACTGGATGAGTTCAGTCAGTTCTTCAGTTCCCTCCCTGCATCCACTCTAGTGGGCATTGGAGCTCTCACAGCTGTCATAGCCTACTGGCTGACCACACGGCCCAAAGCCATGAAACCTCCTTGTGATCTCTCCCAGCAATCAAAGGAAGTCGAGCACAGTGATGGAGCGCACAGGTCTGTGCTGGGGGACAGTGCGAAGCTGCTGACGCATTATCATGACGATGCCAAGACAATGTACGAGGTGTTCCAGCGGGGGTTGCACATAGCTGGTGACGGGCCTTGTTTAGGCTCTAGGCAACCCAAACAGCCATATCAGTGGCTTTCATACAAGGAGTGGATTATTTCCGAGCTGGCCTGTTACACGTACTCTATGGTGGTTGTACCACTTTATGACACTTTGGGACCAGATGCAATTCGCTACATTATCAACACCGCTGAGATCTCCACAGTTATATGTGACAAACCAGAGAAAGCCCAGGTACTGCTCGAGAATGTGGAGAGACAGGAGACTCCCGGGCTCGAGACTGTTATCTTGATGGACCCCTTTGACATACCCCTGGTGGAGAGGGGACACAAATGCTTTAGGAAGAACACACCACAGAGTTCCTATGGAAACCCTAAAGGAGTGATGCTGACTCACGGGAATGTAGTTGCTGACTTTTCCGGCTTCCTTAAAGTGACTGAGAAAGTCATCTTTCCCAGACAGGATGATGTTCTCATCTCCTTCCTGCCTCTTGCTCACATGTTTGAAAGACTCATCCAGTCTGTAGTGTACTGCCATGGTGGGAGGATTGGTTTCTTCCAAGGAGACATCAGGCTTCTGTCAGATGATATGAAGGCACTTCGGCCCACAATCTTCCCTGTGGTGCCCAGGCTGCTTAACAGAATGTATGACAAGATCTTTAGTCAGGCCAATAACCCTGTGAAGCGCTGGCTGCTGGATTTTGCCGCGAAGAGAAAGAGTGCTGAAGTTCTCAGTGGTGTCATACGGAGCGACAGTGTGTGGGATAAGATATTCTTTAGAAAAATACAGGATAGTCTGGGTGGGAGGGTGAGGATGATAGTGACAGGGGCCGCTCCGGCATCTCCCACCGTCCTTGGTTTCCTGCGAGCCGCTCTGGGCTGTCAGGTCTACGAGGGTTATGGGCAAACCGAGTGTACTGCTGGGTGTACTTTCACCACGCCTGGAGACTGGACGTCAGGTCACGTTGGTGCACCGCTCCCCTCTAACTTGATTAAGCTGGTAGATGCAACAGACATGAATTATTTTGCTTcaaaaggagagggagagGTGTGTGTAAAGGGGCCGAACGTGTTTAAGGGCTACCTCAAAGACCAGGAGAAAACCGCGGAGGCTCTCGATGGAGATGGATGGCTGCACACTGGGGACATTGGGAAGTGGTTGCCTaatggtacattgaaaataattgacCGCAAGAAGCATATCTTCAAACTGGCTCAGGGAGAGTATATTGCCCCAGAGAAAATTGAGAACATCTACATCCGCAGTGAACCTGTGTCACAGTTGTACGTCCACGGGGACAGCTTGCAGTCCTGCCTTGTTGGGATAGTTGTACCTGATCCTGAAGAGGTGAAGAAAGCAATAATGGAGGATATGGTGCGCTTGGGAAAAGCAAGTGGCCTACATTCGTTTGAACAGGTCAAGGATATCTACATCCACAGCGAAATGTTTTCAATACAGAACGGACTCCTGACACCGACGTTAAAGGCAAAGAGACCAGAACTGAGAGAGTTCTTTAAGGAGAAAATAGAGCAGCTGTACGCCAACATCTCGATGAGGTGTAACAGTATCTACGTAAAACTTGAAAACAAAATGGTAAAGAAGCAGAAACTGCGCGACATGGCAGGGAATCAGTCGCCCCGCCTGGGCAGATCCTCCTCCAGCAGAGGGCTGTGGTCCACACCTGCCCCTCAGAGGACAAAGCGACAGAGGGTTTTCCAAGTGAACCTGCCCGATGCGAAGGGCAGCCTACACCTCACCCCCATCAACGAGTCCCCCTCATCTCCGCAGGAATTCATCGTGCAAACTGACAAACCCAGAGGGCTGGCAAGCGTCTCAGTGCAGAAAGAGTCGACTTACAGCAGCTGTGCAAGTGGCTCTGTAAATAGCGACAGTACCTCAGAAATGATTCTGCCATCTGGAGTGTCCACCTTTTTCCTTGCTTGCATGGATTCTGATTTGCCTGACATGCCATCCTTGTCAGACTCTTCAGAGAGCAGCCTCTCTTCACCAGAAGTCTTTCGTAAAAGTGACTGCCTTGAAGAGGCATTTGACTTCCTTGATGAAGATGAATATACCTGTGAAGAGATCAGGAACTCTACCCTTCTTGACACCAGTCATGCGGTTGATATAAATATGAAGCAGCCCCTCAACCTGTCTGACATCTTAGGAAAAATTGTCACAAATTTTTATGTGACGCAAGAGATAACTCGAGAATCCCGAATAACTGTTGAAGTTCCTATCCCATTTAAACAACCCAAAAAGAGACAAGCATTCCGACCTGTCAAGTGTCGAAAGAAGGTCACTTTCAAGGAATCTGTAATAATGGAAAAGACTTTCCAAAGCCCTGGAATGAGCTGTGACACTAAAGTTACAACCAAGCAAGTCATTGAAAAGGTGATGTCTGTTTGTGAACCTGAGAAGATAGCGGCTTCTGAAGGACAGAAGAAGGACAGCTGGCAGACTGTTCCAGAGAAGGCAAATgatggagaggagagaagagaagcTGAGAAAAGAGAGAAGGGAAGAAGCACAAGCAGACATTTTCCCAGTTCCTTAAAGGCAGCTGAATATGTGAGGCCCTCATCAAAGTCTGAACCTCACAGTGTAAATCTTCCAGAGCGTCAAAGCAAATACTTCTCCAAGAGACACAGTCCATCCCCTAGAGAAATCAACGGTGTGTCAGTAAATGAAGAGGAATACATGACCCGAgtACTCATCTGCCTTACAGATATTTCCCACCAGGTCCAGATACCAAAGGCTTTATTCATAAATGTGAAAGAATCGATCTGAATGGAATGAAATTTAAAGATTAGCACTTTGGATGGATATGatggtttagtttttgttgtatttagcTCACATGTAAGTTCTTGTTTAtctgttaaaaatgtgtaaaatatggatgtaaatgtatataattaataacaatggaAATGAATGTAAATAGAATTGATACATGTTGAAAAAAGGGACAAATCTGAGTGTAAACCTTGAATAAATtgttgc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131928 lncRNA downstream 417612 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 427228 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 523575 16139099 ~ 16141338 (-) True G105454
TU131884 lncRNA downstream 616391 16043429 ~ 16048522 (-) False AMCG00011271
TU131866 lncRNA downstream 629890 16032251 ~ 16035023 (-) True G105427
TU132092 lncRNA upstream 194039 16893960 ~ 16895074 (-) True G105607
TU132221 lncRNA upstream 609869 17309790 ~ 17312068 (-) True G105701
TU132276 lncRNA upstream 859481 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 859481 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 864248 17564169 ~ 17566963 (-) True G105761
AMCG00011281 mRNA downstream 509 16637296 ~ 16664404 (-) True AMCG00011281
AMCG00011279 mRNA downstream 85321 16540657 ~ 16579592 (-) True AMCG00011279
AMCG00011273 mRNA downstream 465374 16198120 ~ 16199539 (-) True AMCG00011273
AMCG00011274 mRNA downstream 487847 16149736 ~ 16177066 (-) True AMCG00011274
AMCG00011272 mRNA downstream 549954 16110270 ~ 16114959 (-) True AMCG00011272
AMCG00011284 mRNA upstream 45676 16745597 ~ 16746212 (-) True AMCG00011284
AMCG00011282 mRNA upstream 53735 16753656 ~ 16764495 (-) True AMCG00011282
AMCG00011286 mRNA upstream 76430 16776351 ~ 16804290 (-) True AMCG00011286
AMCG00011292 mRNA upstream 210399 16910320 ~ 16920194 (-) True AMCG00011292
AMCG00011291 mRNA upstream 234585 16934506 ~ 16935842 (-) True AMCG00011291
TU131862 other downstream 691041 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 691041 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1162780 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 1291734 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 2596352 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 258260 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 1030030 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 1051332 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1299747 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 1484563 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile