RNA id: AMCG00011284


Basic Information

Item Value
RNA id AMCG00011284
length 297
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00011284
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16745597 ~ 16746212 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTTTTCTTGGAGGAGCAGTTATTCTTTTAATTCAACTGGTGCCTAAAGATTTACACGCCTTGGCCTTGACACTGGAGATGCTGGGGAAGTCTGGCATCACGTCTGCCTTCTGTATTGTCTACGCCATCACTGCAGAGCTCTATCCCACCGTGGTGAGGAACATGGCTATGGGCACCTGCTCCATGGCTGCTCGGATTGGCAACATCATCTCTCCCTACCTGGCCTTGCTATTGTCTCTGGAGCGCTGCCCTTCCTTCTGCCCTAAGGTTTCCGAGTGTCTCTTCATCTCTTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0001887 selenium compound metabolic process biological_process
GO:0015698 inorganic anion transport biological_process
GO:0051597 response to methylmercury biological_process
GO:0050787 detoxification of mercury ion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132017 lncRNA downstream 20444 16655247 ~ 16725153 (-) True G105553
TU131928 lncRNA downstream 498296 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 507912 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 604259 16139099 ~ 16141338 (-) True G105454
TU131884 lncRNA downstream 697075 16043429 ~ 16048522 (-) False AMCG00011271
TU132092 lncRNA upstream 147748 16893960 ~ 16895074 (-) True G105607
TU132221 lncRNA upstream 563578 17309790 ~ 17312068 (-) True G105701
TU132276 lncRNA upstream 813190 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 813190 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 817957 17564169 ~ 17566963 (-) True G105761
AMCG00011283 mRNA downstream 45676 16664913 ~ 16699921 (-) True AMCG00011283
AMCG00011281 mRNA downstream 81193 16637296 ~ 16664404 (-) True AMCG00011281
AMCG00011279 mRNA downstream 166005 16540657 ~ 16579592 (-) True AMCG00011279
AMCG00011273 mRNA downstream 546058 16198120 ~ 16199539 (-) True AMCG00011273
AMCG00011274 mRNA downstream 568531 16149736 ~ 16177066 (-) True AMCG00011274
AMCG00011282 mRNA upstream 7444 16753656 ~ 16764495 (-) True AMCG00011282
AMCG00011286 mRNA upstream 30139 16776351 ~ 16804290 (-) True AMCG00011286
AMCG00011292 mRNA upstream 164108 16910320 ~ 16920194 (-) True AMCG00011292
AMCG00011291 mRNA upstream 188294 16934506 ~ 16935842 (-) True AMCG00011291
AMCG00011290 mRNA upstream 197720 16943932 ~ 16960912 (-) True AMCG00011290
TU131862 other downstream 771725 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 771725 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1243464 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 1372418 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 2677036 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 211969 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 983739 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 1005041 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1253456 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 1438272 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile