RNA id: AMCG00011286


Basic Information

Item Value
RNA id AMCG00011286
length 2454
RNA type mRNA
GC content 0.38
exon number 7
gene id AMCG00011286
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16776351 ~ 16804290 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGCAGGGCCGTCTTTCAGACAGTGTTGCCTAGCAGCTATAGGCTCAGGACCTGCTTTCTTCCAGTCTCCAGCCTGACTTGCGGATTATTTTGACACAGACATGCCCCAGACTGTAACTTTAAGCGGACCCTCGCCCTGGGGTTTCAGGCTTGTGGGTGGAAGGGATTTTAGTACACCTCTCACAATTTCAAGGATTACACCTGGAAGCAAAGCCGCACAGGCAGACCTTTGTGCGGGCGATACCATCCTCACTATAAATGGAGACAGTACGGAGAGCATGACACACATGGAGGCTCAAAACAGGATCAAAGCATGCACTGACCAGCTTGTTTTATCCATCCAGAGgtcAGAAACAAAGATCTGGTCCCCAACAGTTATAGACGATGGCAAAACAAATCCTTATAAGGTTAATCTGGAGTCTGAGCAGCAGgATTTTAGACCCATTGGAAGTGGATATAACAGAAAACCGGCCCAATATGTTCCGGAAGTTCCTCAGAATAATGGCAATTCTAAatcaaatatacagtataataatcCAGTTGGTCTGTACACAAATAACAATGTGGAAACCACTTTACCAAAGCAAATGACTGCTCTCAACCTGGGTTCCCCTTATAGTCCTGAGCCCCCCGTCCAGTCACCAAGCAGCAAGAATGGCTTCAACACTGAGTCGGATGTCTATAAGATGCTTCAGGATTATGAAGCGCCATCCTCTGAGCCTAAACAATCGGGGTCATTCAGATACTTACAGGGGATACTAGAGGCCGAGGACAGTGGTGAAAGGCCTGGAGTGAAGAGTGTGAAATCCCCAGTCAAATCTCCCGTCCCGAAACTTGGGAGCCCCCTACCCAGCTTGCAGAAGCTCCCCCAGTGCACCAGATGTGGAAATGGCATAGTTGGGACGATCGTGAAAGCAAGAGACAAGCTATACCACCCGGAGTGCTTCATGTGTGACGACTGCGGGCTGAACCTGAAGCAGAGAGGGTATTTCTTCATCGAGGAGCACCTGTACTGCGAGACCCATGCCAAGGCCCGGGTCCAGCCACCAGAGGGGTATGATGTCGTGGCAGTCTACCCCAACTCCAAAGTGGAACTAGTCTAAGTCTGCACATTGAAagtatgtgttgtttttatcaaTTTTTTTGTCCTATTCTCATGGGGATGAAAAGCTTTCATGCACTGCATGTTAGAATGATCAGTTGTAACTTGGTGAAATATTAATTGTCTTCAAGGAGTATATTTTAGTTTCATAGCTTctcatacaaatattattcaGAACTTACCatagtgtttcttttcttttcttttttaatacaaaacagtatTGTATGTTTTACACCTACAGACATTATTAGGTCATTTCAATCCATGGTTCAAGTcaactttattttctgtcaatAGCACTTTCACTATATTTCAGTAAACaagttcatttttttccccatgataTCAATATCACTCCAAGTCTCACAAAATATATCTAAGTTGTTTCACCTTCTGTAAAAAAGAGTACATAACACAACATAAAGACTCCATCCTAAATTCTTCAATGTACATATCTGATGCCCTTCTTGTGTCACATCTAAATATCTCAGTCTTTCTGCAACTATTAAATAGCTGGAAGAAGCTGGGACATGTGATAAAaagtttaataagaaatatgGAATATATTGAAACCATGAGCATGTGGAAATGGTCTCCATCTCTTTCATTTTTTGCGTATTCTGTAGGTACAATATTTTTGGTTTATCTTCTAGATGTTTAAGATTATGATTTTtaagagaaaaactaaataatcaTAACAGCTAATATTTCACAAAGAGAATATTCCATGTATCGTAAGCTGGTTATGACCAAAATGTCTCAcgtgaaatgtatttgtgtatccgttttcctttttttttttttttttgttaatcagcttgctttaaatatttccatGTGTTAATGATTGTACtaagtattaataatacttaTGAAACTGAatctcaattcaatttaaacctgaaagtttgtaaaatattttaaaagatgtttatttatacaacaaaaaaaacacagcaaacaacAGTCAAATATTAAATTTGGAATAATGGTCTGCAGAACTAATTCTTACAAGATTGTAATTCTTAGAAGAGAAGAACAGTTCGAAAGTAATCCACACTGTTACTGTAGCAATGCTAAAATACAGTACTATGTGGTAGGTGGTGATTCAGTAAAATGTTAGTTTCCATCTTTATTAGTagtgtacatattttttttctttgtggaattgtattttttaagtgttttaacaaaaataattattaccttttgtctttttacttGAGTGTCATAACATGCTAACTGACCACGAATTATTCACAGCAAAcgtttttaacttattttctaaTCTTTAGTTTTGGTCCTTCAATTCATGTGgttaagtataaataaaataaaataaaagca

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K23353 PDLIM1_2_3_4; PDZ and LIM domain protein 1/2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132017 lncRNA downstream 51198 16655247 ~ 16725153 (-) True G105553
TU131928 lncRNA downstream 529050 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 538666 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 635013 16139099 ~ 16141338 (-) True G105454
TU131884 lncRNA downstream 727829 16043429 ~ 16048522 (-) False AMCG00011271
TU132092 lncRNA upstream 89670 16893960 ~ 16895074 (-) True G105607
TU132221 lncRNA upstream 505500 17309790 ~ 17312068 (-) True G105701
TU132276 lncRNA upstream 755112 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 755112 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 759879 17564169 ~ 17566963 (-) True G105761
AMCG00011282 mRNA downstream 11856 16753656 ~ 16764495 (-) True AMCG00011282
AMCG00011284 mRNA downstream 30139 16745597 ~ 16746212 (-) True AMCG00011284
AMCG00011283 mRNA downstream 76430 16664913 ~ 16699921 (-) True AMCG00011283
AMCG00011281 mRNA downstream 111947 16637296 ~ 16664404 (-) True AMCG00011281
AMCG00011279 mRNA downstream 196759 16540657 ~ 16579592 (-) True AMCG00011279
AMCG00011292 mRNA upstream 106030 16910320 ~ 16920194 (-) True AMCG00011292
AMCG00011291 mRNA upstream 130216 16934506 ~ 16935842 (-) True AMCG00011291
AMCG00011290 mRNA upstream 139642 16943932 ~ 16960912 (-) True AMCG00011290
AMCG00011294 mRNA upstream 174308 16978598 ~ 17004504 (-) True AMCG00011294
AMCG00011297 mRNA upstream 343725 17148015 ~ 17159586 (-) True AMCG00011297
TU131862 other downstream 802479 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 802479 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1274218 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 1403172 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 2707790 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 153891 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 925661 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 946963 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1195378 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 1380194 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile