RNA id: AMCG00011287


Basic Information

Item Value
RNA id AMCG00011287
length 4719
RNA type mRNA
GC content 0.44
exon number 26
gene id AMCG00011287
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16865367 ~ 16894925 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgattatttaatgatATCGATACCCTCTTAATGTGGGTGTTGCATGCAATCTTATATTTTTCAGAAGGCACCtaaaaaatatcacaaaaacTGCAAGATGTCGAAGATTGAAAAGATGAGCATTCTTGGAGTGAGGAGTTTTGGAGTtgaagacaaagacaaacaagTCATCTCCTTCTTTAGCCCTTTAACTGTGTTAGTTGGACCCAATGGTGCTGGGAAGACAACTATAATCGAGTGCCTGAAATACATCACAACTGGAGACTTCCCTCCAGGAAGcaaaggaaatacatttgttcatgACCCAAAGGTTGCTCACGAGACAGATGTCAGGGCCCAGATCCGCCTGCAGTTCAGAGATGTAAACGGAGAGCTGATAGCGGTCCAGAGATCAATGCTTTGCACACAGAAAGGGAAGAAGTCTGAGTTTAAAACCCTGGAGGGAGTCATTACTAGAATGAAACATGGTGAAAAGGTGAGCCTGAGTTCAAAGTGTGCAGAGATCGATCGAGAGATGATTACAGCGTTGGGAGTTTCCAAAGCTGTCctcattaatgtaattttctgcCACCAAGAGGAATCAAACTGGCCCCTTAGTGAAGGAAAAGCTCTCAAGCAGAAGTTTGATGAGATATTTTCCGCTACAAGGTACATCAAGGTTTTAGAAACCCTACGCCAGCTGAGACTGAAGCAGGGCCAACGGGTGAAGGAGTGTCAGATGGAGCTGAAATAcctcaaacaaaacaaggaaaaatcCCAGGAAATTCAAGAACTTTTGAGCACCAAGGAATCTCAACTAGCAGCTTCTAAAGATAATGTACAATCCATTGAGAGTCAGATTGAACCATTGGAGAACCATCTAATGGATATCGATACAAATCTGGGAAAGGTGATGAAGCTTGACAATGACATTAAAGCCCTGGACAGCCGAAAGAAGCAAATGGAAGAAGACAATCACGAACTGCAAGAGAAAATGGAGCAGGTATTCCAGGGTACAGATGAGCAGCTCAGAGAGATGTATCAGAACCATCAGAGGACCgtgagggagaaggagagaaggcTGAATGACTGTCAGCGGGAGCTGGAGCGAGCCAACAGGGAGTGTCAGAGACTGAATCGCCAGAAGTCTGAACTGCTGGTTGAGCAGGGCCGTCTTCAGCTACAGGCAGACCGTCACCAGCAGAACATTAAGACCCGTGATTCGTATGTCAAGGCCTTGGCGTCTTACCTGGAGATGGATGGCTATGATCGAACGCCTTTCAGTGAGAGACAACTGCAGAGCTTCAACGCTCAAGTGAAGGAGAGGCAAGAAAAGGACTTGGAGGCACTAAACCAAGTGATGAGGGActtccaggagagagagaccctAAAACAGAATGCTATTGATGAGATACGAGACAAGAAAACTGGCTTAGAGCGAACCATTGACCTGAAGATGGAtcttcagaataaaaaacagcaagaaCTACGAAGTGTTAAGAGTGATCTTCAGAAGCTGGAGGGATCCTCAGACAGACTTCAAGAACTGGAACAAGAGCTTCTAAAAGCCGAGCACGAGCTGCAGAGCGCGGTGGAGAGCTCTACTGTTGACACGTTAAAAGCAGATGTACTAGAGCTGCAGCGTGAGAAAGGAGAGCTTGACCGAGCACAACGCAAACTAGACCAGGAGATGGAACAATTGAACGCACACACAATGGCAAGGACTCAGATGGAAATGCTGAAGAAAGATAAGGCTGACAAGGAAGAACAAGTACGAAAGATTAAATCTAGACACCAAGATGAATTGGGGTCATTGTTGGGTTATTTCCCAAATAAAAGACAGCTGGAAGACTGGATTCATGCAAAGAACAAGGAAATTAACCACACCAGAGACAAACTGTACAAGCTGACTAAGGACCTGGCTTCGAAGGAGCagaataaaaatcacattagtACTGAGATCAAACGCAAAGAGCAGCAACTAGCAAATTATGAGGAGAAGCTGTTTGAAGTATGTGGAAGTCAAGATTTTGAATCAGACCTCTCTAAACTGCAAGAtgatattgaaaaaaactcCAAACAAAGAGCCATGCTTGCTGGAGCCACAGCGGTGTATACGCAGTTCATCAGCCAGCTCACGGAGGAGAATGAGCCCTGCTGCCCGGTGTGTCAGCGCATGTTCCCGTCAGAGGCAGAGCTACAGGACGTGATCAACGACATGCAGTCCAAGCTGCGCCTCGTCCCCGACAAACTGAAGAACACTGAGCAGGACCTCAAGAGaaagcagaagaagagggatgACATGATGGGTCTCAAACCGATACGGCAAACTGTCAGTGAACTACAGGAAAAGGAGCTGCCCGAGTTACGGAACAAGTTGCAGAGTGTAAATCGGGAAATCGAACGGCTCAAAAGTGACATTGAGGAGCAGGAGACGCTCTTGGCCACCCAGATGTCGGAAGAAGAAACTGCGAAAGCCTGCTTGCAGGACATTTCACTGATGGACAGATACCAGatggatttgaaagatgtgGAGCGGAAAATTGCTCAGCAGGCCACAAAACTCCAAGGTGTGGACTTGAGCCGCACCGTGCAGCAGGTCAATCAGGAGAAACAGGAGGCACAGCACAAGCTGGACACAACATCTAGCAAAATAGAACTGAAGCGAAAGCTGATCCAAGACCAACAGGATCAAATCCAGTTCTTGAAAAGCAGCGTAAATGAGACACTAAGTGAAAAGTTGCAGATTTCCAGCAACATGCAGCGCCAGCAACAACTAGAGGAGCAGTGCATAGAGGTTTCGACAGAGATACAGTCTCTCCATAGAGAGATTCAGGAGGCCAAAGAGCAGGCATCTCCCCTGGTTGCTGCTCTGGAAAAACTACAGCAGGAGAAGCACGACCTCTCAGAGCGGAGAAAGCTGAAACATGAGGAGGGACTGGAGAAGATAAATGCCATTAAGGAGAAAGTTAGAAACATCAACGCCTGTGAGAGAGAATTTGAAAAGTACGTAAAGGAGGGAAAGGACGAATACAAAGAGCAAAAAGAGGCTGAGCTGcaggaaacaaatacacaactccatgaagcagaaaagcagagagagaaaattcaAAAAGAAATGGGAAATATCAGGCAAGACATTGACACACAGAAGATCCAAGAGAGAGGGCTTCAGGATAACCTGACCTTAAGGAAGCGAATTGAAGAGCTTCAGGAAGTCTCTGAGAAAAGGAAGGCACTGATGAAGGAAATGGGGGAGATGCAAGTAATGCAACTAAGAAGTGAACGAAGAGAGGTGGACAATAAGATTGAAGAGCTGAAAAAGAATCGCAGCTTAGCCATGGGCCGACaaaaagggttcgaggaggagATCCTTCGCTTTCGGAAGGAGTTACGTGAGGAGCAGTATCGTGATGCAGAGGAAAAGTTCAGGGAGAAGATGATCGTGATGCGAACCACAGAGCTCGCTAACAAGGACTTGGACATTTATTACAAGACTCTAGACCAAGCAATTATGAAATTCCACAGTATGAAAATGGAGGAGATCAACAAGATTGTCCGAGACTTATGGAGAAGCACTTACCGAGGACAAGACATCGAGTACGTGGAGATCCGCTCCGATGTGGACGAGAACGTCTCGGCCAACGTGAAGAGAAGAACCTACAATTACCGCGTTGTCATGGTCAAGGGGGAAACAGCGCTGGACATGAGAGGCAGATGTAGTGCTGGGCAGAAGGTGCTGGCTTCTCTTATCATCCGTCTTGCTCTTGCCGAGACCTTCTGTCTGAACTGTGGCATTCTCGCTCTGGACGAACCAACTACAAACCTGGACCGGGAGAACATTGAGTCTCTGGCCCATGCTTTAGTGGAGATCATTAAGAGCCGTTCCAGGCAACGTAACTTCCAGTTGTTGGTCATCACCCACGATGAAGACTTTGTGGAGCTGCTGGGCCGCTCAGAGTACGTGGAGCATTTCTACAGGATTAAAAAGAACATTGAGCAGTGCTCAGAGATTGTGAAGTCAAGTGTTGCATCGCTAAACTCATATCTTCATTGACCTGAAGAGCATCACAAGGTGGCATGCTGAGAGGAAGTTGCTGTTCGTTCTCCTTCAGTTCATCAAAATCTCTGTGACTTTATGTATGTTATCTTGGAAtaattaaaaataataataattgcatcccagcctttaaaatggaaaaagtttCTTAATTTCCAATGATGTTTCGCCTGTTTTCCTTAAACACAGATGTGCattgtgatttgtaaatgttgaCGTTGGGTTGCAGACcttgatttttctgttttgtttaaaaatacgtTTTTTACTGATTTAACTTGAAACTGAACAGTAACAATCTCTTCAAAGCATCTCCCTTTCAAATTGCAGCATACATATGTCTCTGCAGAATTGAAAGATTATAAGGGTTAGATATTTTGAAAGATAACTTGCACATTTGTATTACTGATAAAGATATAGCGCTAATGTGAATAAATGTCTTCAGAAAGTGTTCCGAGAGATCGCTAGAAAGAATGATTAACTTGCACAAGCATGTAGTTCTTTATTAATTGTACTCCTGTATGTTTGCCTTCTGAAattcacatcattttttaaGTAATCTGTAAATCTGTTAGTAATGCATTGGAATTAAATATATGATGCTTCTGGTGCAGTAATAAAACAACCCATGCAAGAAAAATCTTCTGTGAAccaaagcaaattaaacatattGGAGACCG

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0030870 Mre11 complex cellular_component
GO:0004518 nuclease activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10866 RAD50; DNA repair protein RAD50

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131997 lncRNA upstream 140214 16724688 ~ 16725153 (+) True G105538
TU131909 lncRNA upstream 665068 16200049 ~ 16200299 (+) True G105466
TU131891 lncRNA upstream 732380 16132758 ~ 16132987 (+) True G105448
TU131886 lncRNA upstream 754986 16105586 ~ 16110381 (+) True AMCG00011268
TU131881 lncRNA upstream 797925 16067233 ~ 16067442 (+) True G105438
TU132204 lncRNA downstream 414834 17309759 ~ 17312068 (+) True G105684
TU132235 lncRNA downstream 483695 17378620 ~ 17378860 (+) True G105715
TU132287 lncRNA downstream 840065 17734990 ~ 17742387 (+) True G105756
TU132310 lncRNA downstream 856325 17751250 ~ 17751484 (+) True G105769
TU132318 lncRNA downstream 870966 17765891 ~ 17768221 (+) True G105776
AMCG00011289 mRNA upstream 22671 16827176 ~ 16842696 (+) True AMCG00011289
AMCG00011285 mRNA upstream 109588 16748231 ~ 16755779 (+) True AMCG00011285
AMCG00011280 mRNA upstream 152591 16706327 ~ 16712776 (+) True AMCG00011280
AMCG00011277 mRNA upstream 394106 16453070 ~ 16471261 (+) True AMCG00011277
AMCG00011278 mRNA upstream 438350 16426014 ~ 16427017 (+) True AMCG00011278
AMCG00011288 mRNA downstream 67391 16962316 ~ 16977460 (+) True AMCG00011288
AMCG00011293 mRNA downstream 83842 16978767 ~ 16979953 (+) False AMCG00011293
AMCG00011295 mRNA downstream 111529 17006454 ~ 17008286 (+) True AMCG00011295
AMCG00011296 mRNA downstream 114383 17009308 ~ 17019306 (+) True AMCG00011296
AMCG00011298 mRNA downstream 324763 17219688 ~ 17222519 (+) True AMCG00011298
TU131803 other upstream 881288 15963340 ~ 15984079 (+) True G105373
TU131793 other upstream 1009583 15853764 ~ 15855784 (+) True AMCG00011252
TU131792 other upstream 1012978 15850646 ~ 15852389 (+) True AMCG00011253
TU131632 other upstream 1542942 15320780 ~ 15322425 (+) False AMCG00011241
TU131514 other upstream 2244833 14619690 ~ 14620534 (+) True G105139
TU132132 other downstream 83567 16978492 ~ 16982241 (+) True AMCG00011293
TU132321 other downstream 889238 17784163 ~ 17788050 (+) True G105778
TU132460 other downstream 2217985 19112910 ~ 19117369 (+) True AMCG00011328
TU132491 other downstream 2327130 19222055 ~ 19222421 (+) True G105916
TU132810 other downstream 3200304 20095229 ~ 20162966 (+) False G106139

Expression Profile