RNA id: AMCG00011290


Basic Information

Item Value
RNA id AMCG00011290
length 3213
RNA type mRNA
GC content 0.46
exon number 21
gene id AMCG00011290
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16943932 ~ 16961069 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgatcaTTGAGAATGTGGAGGCTTTGAAGTCGTGGCTGGCCAAACTCTTGGAACCGATATGTGACGCAGATCCATCAGCTTTAGCCAACTATGTAGTTGCTTTAGTAAAGAAAGACAAACCTGAAAAGGAGCTTAAAGCACTTTGTGCAGATCAACTGGATGTCTTCttacaaaaagACAAACTGTTTGAAtgtttaacaacaaaaaactactTGGGAAATCCAGAATTACCAGTGAAGGAATCTATAAAAGAGGACACGAAACCTGTAAAAATTGAAGATATCAAGGAAGAGCCCAAAGGTGTGGAGTGTCACCTGGGTGTAAACCACCGTACCCTCTTGTGTTTATCAGACCACAGGCTGAAGTTTGAGATGGAGAGGAAGGATCCGGAAGGTTATCTCCCGATGTCAGTTCCAACGTGTAGCTCCCTACAGCAACCGCCACCACCTCTTCTCCCGCTGCCTCCCCCTCAGCAGCAGTATTCGTCTGGGGGACCAGCTGCCCCCAGCTCCGTTACTGTGGTAGCGCCAGCTCACCTCCCAGACAGCACCACTGAGAGCTGGTCTAATTACTTCTCTAATCACAGCGACTCCAAGCCATTCAACAGAAGCAACCCTCTGAAACGCCGCTGCAGAGACTACGACGAGAAGGGCTTCTGTGTGCGTGGAGACTTGTGTCCCTTCGATCATGGCAATGACCCTTTAATAGTGGATGACGTCACCTTGCCAACCATGATTCCTTTCCCTCCCCCGCCTGGCATGCCACCTCCTCGGATGCCCATGCCTCCGATGCCAGAGCCACCCACCAACCTACGGATACCCATGCCTCCTCACGGGCAGCCCCCACCCCCTGGGATCTTCCCAATACCAGgaCCTCCATTAATACCAACAAGTGCAATAGATACTCGTGAGCATTCAGGGACGAGTTCAATTTCTACTCTTGCACCGCCAGGAGTAGGACCTCCTCCTCCTATACCTCAGCATCCTCAGTATACATTATCCGAATATAACTATGATCCTGAAGCTTATAACCCAGAGGCCCCTGGCATCACGACTCCAGGCAGACCCCAGTACAGGCAGTTCATCCCCCGGATACAGACACAGCGGCCCAATCTCATTGGACTCACTTCCAGTGACATGGACACGCAGAACTCCAGAGCAGCGAATATTGTCATCCAGACTGAGCCGTCTGCTTCAGTTATGACAAATAACAACGCCAGGTTCAGCAATGACCAGGAGAGCAGGAAGAGGCCCATGTCGAATGCTGATGTGCCACCGGTGAAGAAGCCCTGGATGGACAAGCAAAATTTCAACAACCAACATAAACCTggtttccaaaagaaaaaccaTTATGCCAACACGAAACTTGAAGTTCGCAAAATCCCCAGAGACCTCAATAATATCACCAAACTGAACGAGCACTTCAGCAAGTTTGGCACTATTGTCAACATCCAGGTTGTGTTTGGAGGTGATCCGGAAGCAGCTCTCATACAGTACACTGCGAATGAAGAAGCCAGGAGAGCGATATCCAGCACAGAAGCGGTGTTAAATAATAGGTTTATCAGAGTTTACTGGCACAGGGAGAACAATGAGCAGCAGCATCAGCAGGCCCAGACGCAGACTGCGCCAGTAGCGCCCCCCCATGCCAATGTTCATAAGgtTATCAACAAGCCACATAACCCTGGATCTTACGTCCTTAACAAGATGACATTGAAGCACCGTCTCGGGGCCACAGCTGGAAATAAAGTAGATTCACTCCAGTCTAATACAGACCCTTCACTGGCAATGACTAACTCTACAAGTCTACAAAAGGGCCCCTACAGTTCTGCGGTAATGAAAATGACTTCAAAACCAATGGCGAAAGCTACTAAAGTACTTGAAGCACATGAGGCCGAGACGCTAAAACTGCAGCAAGATATGAGGAAAAAGAAGCAAGAAATGTTAGAGAAACAAATAGAATGTCAGAAGGTACTAATCAACCggcttgaaaaaaataaaaacatgaaaccagAGGAAAGAGCTGGAATAATGAAGACACTAAAAGACCTTGCAGAGATGATCTCTCAGCTGAAGGATGAAATGAAACCAGCCACCAACACTTCAGTGAAGTCTGCCCAGCCCAAGACTAAGATAGATGCACAGAAAGAACTGTTAGACGCAGAATTGGATTTCCATAAAAAGTTAAGCTCTGGAGAAGACACAACCGACTTGAAAAAGAAACTTAGCCAGTTACAGGTAGAGGCGGCTCGCTTGGGGTTGATTCCCGCTGGACGAGGAAAGGTGACTCCAGGCCGAGGTCGTGGCAGAGGTCGAGGGAGGAGTATGAGGGGGCGAGGAGGAGGCAACCACATGGTGGTCGACCACCGGCCTCGAGCCCTGGCCATACTGGGGGTGACCAAAGAGGAGAAGGAAGAACTCATGCCTCACTTTGTGAAATACGGGGAGATTGAAGATCTGCGTGACCATGATGCCACGAGTGTTGTCATGACATTCAAAACTCGAAGTGAGGCAGAAAATGCTGCGAATCAAGGTGCAAAGTTCAAAGGTCGCATTCTACAGATATCATGGTATAAGCCCAAGACACCATCTGTATCCACTGAaccagaggaagaggaagcGAAGGAAGAGGAAACGGAGAGCTCCCTCTTACTGcccgaggaagaggaggaagacgaTGACGAAGAGGACGAAGATGAGAGCCGTTCATGGAGAAGATGAAGAGAATATTGCTCAACCTTTTTTGTGAAAAGgactgttaattatttttttagtacaaaattacatgtaattaataaggcagaaattgtgtttttggaaCGGAATTCAGGTTTTGAGACTAAGAAGCCAAAATAACTGAAGTATCTGAGACCGTACTCTCTAAAATGGTAAAAATAGGAATGTGAGAAAACCACAAAACTCCAGGCAGACcgttttttcattttaggttaTTTCACTTTACATTGCTCTCTACAGCTGTATACAACATCAAGCAAAACACTTATGATTGATCTGAACTGTGAGCCCAGCTCAACCTGTTACAGGCTTCATAGAGTTTGTCTCCATAATTTGTCAAATTGCTTTAAGTTCTGTCAGGTAGTTTTTTAACCTTTTGTTAGTTGTTGGCTTCATcctgttttataaaaatgttttccttttggaTTATCAATTGAAACGTTTAGATCAGttttgaaggtttttttttttttttttttt

Function

GO: NA

KEGG:

id description
K13193 RBM27; RNA-binding protein 27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132092 lncRNA downstream 48858 16893960 ~ 16895074 (-) True G105607
TU132017 lncRNA downstream 218779 16655247 ~ 16725153 (-) True G105553
TU131928 lncRNA downstream 696631 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 706247 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 802594 16139099 ~ 16141338 (-) True G105454
TU132221 lncRNA upstream 348878 17309790 ~ 17312068 (-) True G105701
TU132276 lncRNA upstream 598490 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 598490 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 603257 17564169 ~ 17566963 (-) True G105761
TU132306 lncRNA upstream 784737 17745649 ~ 17751099 (-) False AMCG00011313
AMCG00011291 mRNA downstream 8090 16934506 ~ 16935842 (-) True AMCG00011291
AMCG00011292 mRNA downstream 23738 16910320 ~ 16920194 (-) True AMCG00011292
AMCG00011286 mRNA downstream 139642 16776351 ~ 16804290 (-) True AMCG00011286
AMCG00011282 mRNA downstream 179437 16753656 ~ 16764495 (-) True AMCG00011282
AMCG00011284 mRNA downstream 197720 16745597 ~ 16746212 (-) True AMCG00011284
AMCG00011294 mRNA upstream 17686 16978598 ~ 17004504 (-) True AMCG00011294
AMCG00011297 mRNA upstream 187103 17148015 ~ 17159586 (-) True AMCG00011297
AMCG00011299 mRNA upstream 212785 17173697 ~ 17203530 (-) True AMCG00011299
AMCG00011301 mRNA upstream 351539 17312451 ~ 17342762 (-) True AMCG00011301
AMCG00011304 mRNA upstream 418814 17379726 ~ 17395987 (-) True AMCG00011304
TU131862 other downstream 970060 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 970060 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1441799 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 1570753 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 2875371 14067215 ~ 14068561 (-) True G105050
TU132307 other upstream 769039 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 790341 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1038756 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 1223572 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other upstream 1223572 18184484 ~ 18191195 (-) False AMCG00011316

Expression Profile