RNA id: TU132119


Basic Information

Item Value
RNA id TU132119
length 550
RNA type TUCP
GC content 0.39
exon number 4
gene id AMCG00011290
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16943932 ~ 16961069 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCACTTGAACGTAAAGCAGTTTGTTCGACCTGCAAGTTGCCTAGTATTAGGCCTAAAAGCTGCATCCACAATCTGTATACTCTGATAATGAAAGTGGGATTAACGCCAAATCTCTTTAATTTATAGTCAGTattataaagtacatttttaaagaaaatgatcaTTGAGAATGTGGAGGCTTTGAAGTCGTGGCTGGCCAAACTCTTGGAACCGATATGTGACGCAGATCCATCAGCTTTAGCCAACTATGTAGTTGCTTTAGTAAAGAAAGACAAACCTGAAAAGGAGCTTAAAGCACTTTGTGCAGATCAACTGGATGTCTTCttacaaaaagaGACAACTGGATTTGTAGACAAACTGTTTGAAtgtttaacaacaaaaaactactTGGGAAATCCAGAATTACCAGTGAAGGAATCTATAAAAGAGGACACGAAACCTGTAAAAATTGAAGATATCAAGGAAGAGGCAGGGAATTGTGATGAAGACCGGGATGGACGAAGGAGAAGGAGCCCTTTGAGAAATCGGTCTGATCTTAATGAATCACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132092 lncRNA downstream 63107 16893960 ~ 16895074 (-) True G105607
TU132017 lncRNA downstream 233028 16655247 ~ 16725153 (-) True G105553
TU131928 lncRNA downstream 710880 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 720496 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 816843 16139099 ~ 16141338 (-) True G105454
TU132221 lncRNA upstream 348721 17309790 ~ 17312068 (-) True G105701
TU132276 lncRNA upstream 598333 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 598333 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 603100 17564169 ~ 17566963 (-) True G105761
TU132306 lncRNA upstream 784580 17745649 ~ 17751099 (-) False AMCG00011313
AMCG00011291 mRNA downstream 22339 16934506 ~ 16935842 (-) True AMCG00011291
AMCG00011292 mRNA downstream 37987 16910320 ~ 16920194 (-) True AMCG00011292
AMCG00011286 mRNA downstream 153891 16776351 ~ 16804290 (-) True AMCG00011286
AMCG00011282 mRNA downstream 193686 16753656 ~ 16764495 (-) True AMCG00011282
AMCG00011284 mRNA downstream 211969 16745597 ~ 16746212 (-) True AMCG00011284
AMCG00011294 mRNA upstream 17529 16978598 ~ 17004504 (-) True AMCG00011294
AMCG00011297 mRNA upstream 186946 17148015 ~ 17159586 (-) True AMCG00011297
AMCG00011299 mRNA upstream 212628 17173697 ~ 17203530 (-) True AMCG00011299
AMCG00011301 mRNA upstream 351382 17312451 ~ 17342762 (-) True AMCG00011301
AMCG00011304 mRNA upstream 418657 17379726 ~ 17395987 (-) True AMCG00011304
TU131862 other downstream 984309 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 984309 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1456048 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 1585002 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 2889620 14067215 ~ 14068561 (-) True G105050
TU132307 other upstream 768882 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 790184 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1038599 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 1223415 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other upstream 1223415 18184484 ~ 18191195 (-) False AMCG00011316

Expression Profile