RNA id: TU132132


Basic Information

Item Value
RNA id TU132132
length 2834
RNA type TUCP
GC content 0.39
exon number 4
gene id AMCG00011293
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16978492 ~ 16982241 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTTCTTCCAAATTCGGTCACAGAAGTGTTTGCCTTCAGTCGTACAGCTTCAATGGCAGTGCAGTTATGACCCCAGTGATcaaGCTTAATTTGAGAGACTCCGATGCCTCTTGTATCTGACTGACTTGGTCCCTGAATATACGGGGACGATGGCAGACCTTCCTATCGTCACTCAGCCGGGCCTGGGCGTCACCACGACCACTGTGACGACCATCACTCAGACGGGGGGTGACTGGAGCACGGGCCTCTTCAATGTGTGCAGCGACAAGACCATCTgtGTTGTGGGTGCAGTGTCCCCCTGCTGTTTGGACCTTAGCTTGGCGAACCAGTACGGCGAGTGCCTGTTCTTACCGCTGCTCCCGGGTTCCACGTTTGCCATGCGCGTAGGGATTAGGGAAAGATACAAACTACGGGGCAGTGTCTGTGGGGACTGGGCCGCAGTGTACTTTTGCTATCCCTTAGCAGTCTGCCAGATGATCCGAGAGTTAAAGAGAAGAATAAGGACACAGATCTACCACGTTTCAACAACCCTTGAGTGCTCCTGATTCTCCTGGTCCATCAGACAGCTCACCTTTTCCCTTTCAATTTAGcttattacagaaaatgaaatctAATTTTCTTTGAAATCTCTGTGATGTATTCATAATCAGGTACAGAGTATGGGTGGTGATAGAATCCATTCAGATCTTGCTTAATTGTgacaaaacagtttaatcagTATTTATACACTTATGTTTTATGAATGCAGCATCAGATGTTTAGGAGCAGTAGACAACATGGCTGAGAAattgaaaacatgcaaacatatttagttttattttctgaaattaaaaataaaaactgctgaCCTGTCCATACCTTGTCCAGTATGCACTTGGTAACAAACTCCTTTAAATCTCCctccatattaaaaaacattttctcaaatGTACAAAAGTTTCATCTCTTCTAGACATTTCATTTGGAGAAAATCCTCCCCCCCATagcatttcataaatatttcacattcaacTTTCAATGACAAAGGATGGAATTTCTCATGGAGATCTATATTACAAGTGTATATTTACATAGtcttttctattctattctgtGGCATTTTGACATTTAAGAAGGCTGACAACATATTTAACTTAGACATTTTACTCAGATGAAGCCAGTGTGAAGTATGAACTGTTGAAACAATATTCTGCTTGTTGTCTGTGCTTATCAAAAATATTTAAGTTACTGCTATTACTTATTAACTTGGCAAGTTAACATTAGTATTGCTAGTGTCACTTTTGACTTCCTCATCACTTTCCACATACCCCACAATAGCtcacattttctcttttgatttcagtgttagacttgcatgcatttaaatttatttcTTGGTACTTCTGGACAGTTTTGACACACTGATTGTTACgcattcaacaaaacaaattctaGTATTcctttgttaattttttttaacattattgcAGTATCataagaataaaatgtattttaatgtaatctattgcaaTATGTTGGACTTGTCGTCATGAGTTTAAGAAACCCATCTGTTAAAGtgtgcattttacaaatgtacagcTTTGTTATGATGACCACAGTATGATACATATTAGCATTCATAAAtggcattcatgtttttaatgattgttgGTGTATATTTGTGCACTGAGTGATATGGTTCAAAGTGCAGTAAAAGGATAAGGAGTTTAGGATCATCCTAGCCCTTCTTTGAAATAGTCCAGTTACATCAAAGACTCTACCTCCTGGTAAGGCAGAAACCTCACAAATAAGGTGCATTTTAAGTGCATGGAAGAATAACTAGGAtcctaaatataaataataatgtaaatgtccAAATGTATACTTGAGtcacagaaatacacattttcagttttccatttaaatagaTATTATGGCTTGCAAGGCACTAAAACAAACTGTTCACTGACTGTTTTCCCCACCAGATTTTGCCATGTCCATGCACTGGGAAGGGTAGCGTAGATTACGTTTACAATGAGCTTACAAATGTCCAGATTAATgatgatgtattttaaactttggTGTACAGCCATCGTTTACAATGGAAAAATACCCAGTGTGAAAATATAATGCTAAATTATACATTCAAAGTAGGCACTGTGGgctgcatttgaaatattagGCAATCTGTATAATGTGAAAGGTATTAGGCAAGAGACTCTGCTATCACATAGCGTACAGTCcaaaatcagcatctctacccAGGTCCACCACCTCCAGCTTAGAGATGTATAGTAACAATTACGCTTCTAGTGAGAGGGGATGTTCACTCCAACAGGGGTGCTGACTGGACAGAATCTGGTATGTGCAGACTGGAGGTAGAGTTCACTTCCTTTAATGCTGTAAAAACATGGGCTGGCCCAAGCCCAGCTTACTCTATATCAGTATTTTGCCCCACATCATAGTTTAGGGATTCCTCCGTTTGTAAACCAGTGGCAGGGATTTCATGGCCCAGTTCACACAGACTTTGATGACTATAGTAGTGCAGTTGTGTTTAACAGTGATAAacatcaaaacatattttaagtgttttggaCACCCGTTTACTATATTGAAAAAGGGTCCTTCTGTGTCAAACTATTTCACAAACTGAGAACAAATATCTTAAAAGGTGCAGATCAGTCAGCTCTGTTTCTCTAGAAATTCCAAGATGTTACTTTGGAAGAGCCCGGTTTTCCCACTCTTCTCTTGGGTGACCAGTAGCCTGCCTTCTGGTCGTGTTTTCTGTACCTGGACACAGTCTCCTTCCTTCAGGTGCAGTTCAGCATCACTCTGAGCTGTATAGGGCACTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131997 lncRNA upstream 253339 16724688 ~ 16725153 (+) True G105538
TU131909 lncRNA upstream 778193 16200049 ~ 16200299 (+) True G105466
TU131891 lncRNA upstream 845505 16132758 ~ 16132987 (+) True G105448
TU131886 lncRNA upstream 868111 16105586 ~ 16110381 (+) True AMCG00011268
TU131881 lncRNA upstream 911050 16067233 ~ 16067442 (+) True G105438
TU132204 lncRNA downstream 327518 17309759 ~ 17312068 (+) True G105684
TU132235 lncRNA downstream 396379 17378620 ~ 17378860 (+) True G105715
TU132287 lncRNA downstream 752749 17734990 ~ 17742387 (+) True G105756
TU132310 lncRNA downstream 769009 17751250 ~ 17751484 (+) True G105769
TU132318 lncRNA downstream 783650 17765891 ~ 17768221 (+) True G105776
AMCG00011288 mRNA upstream 1032 16962316 ~ 16977460 (+) True AMCG00011288
AMCG00011287 mRNA upstream 83567 16865367 ~ 16894925 (+) True AMCG00011287
AMCG00011289 mRNA upstream 135796 16827176 ~ 16842696 (+) True AMCG00011289
AMCG00011285 mRNA upstream 222713 16748231 ~ 16755779 (+) True AMCG00011285
AMCG00011280 mRNA upstream 265716 16706327 ~ 16712776 (+) True AMCG00011280
AMCG00011295 mRNA downstream 24213 17006454 ~ 17008286 (+) True AMCG00011295
AMCG00011296 mRNA downstream 27067 17009308 ~ 17019306 (+) True AMCG00011296
AMCG00011298 mRNA downstream 237447 17219688 ~ 17222519 (+) True AMCG00011298
AMCG00011302 mRNA downstream 277774 17260015 ~ 17261217 (+) True AMCG00011302
AMCG00011300 mRNA downstream 313302 17295543 ~ 17307824 (+) True AMCG00011300
TU131803 other upstream 994413 15963340 ~ 15984079 (+) True G105373
TU131793 other upstream 1122708 15853764 ~ 15855784 (+) True AMCG00011252
TU131792 other upstream 1126103 15850646 ~ 15852389 (+) True AMCG00011253
TU131632 other upstream 1656067 15320780 ~ 15322425 (+) False AMCG00011241
TU131514 other upstream 2357958 14619690 ~ 14620534 (+) True G105139
TU132321 other downstream 801922 17784163 ~ 17788050 (+) True G105778
TU132460 other downstream 2130669 19112910 ~ 19117369 (+) True AMCG00011328
TU132491 other downstream 2239814 19222055 ~ 19222421 (+) True G105916
TU132810 other downstream 3112988 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 3129839 20112080 ~ 20162966 (+) True G106139

Expression Profile