RNA id: AMCG00011294


Basic Information

Item Value
RNA id AMCG00011294
length 4940
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00011294
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16978598 ~ 17004504 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGACTTGGCCCTGCTGGATCTACTGGAGTGCCCTTTGTGCTTCGAAAGACTCGATGTTTCAGCCAAAGTGTTACCGTGCCAGCACACATTCTGTAAGCCTTGCCTACAAAGGATGGTGTACTCCAAACCGGGGCTGCGGTGCCCCGAGTGCCGGACTCCGATATCTTGTGGGATTGAGGAGCTGCCTGCCAACGTCCTCCTGGTTCGTCTTCTGGATGGAATGCGACAGGGCTTCCAGAATGGAACGAAGGCGGGCACTTCCCAGAGATCTTTGCTCTCCCTGGCACGGAATCAGTCCTTGCGGAGAGGCAGAGATTCCAGCAGTTCCCAGTCCTCCCAGCGTAGGCTGACACTAAGTCGTCGGAGCACACTAGATGGGGCAAGTATCTCTGGATTCAGTCTCTCTGTGCCATGTGCCCGGGCTTTGTATCATTACAGAGGTACCAGCCCCGGAGAGCTGACTGTAAAACCAGGAGATCTCATCATCCTGAGGCAAAAAGTTGATGATGATTGGTACCACGGAGAAGCCAATGGCAACAGTGGTCTTGTCCCTGCCAGCTTTGTCCAAGTCATCCATCCGCTGGCCCAGACACTGCACCTCAGACCCCCTTCTGACTCTGAGGACAAGGATGAAAATAAGAACAACCTGATGTCCCTAAAGactAATTCTGCTGCTGTGAGGCTTACAGGGAAGGTGAATAGCTCCCCGGAAAGCCGCAGCAATTTGGGGAACAGCACAGCCACTTTGGTGGTTTGCCACAGGCTGGGCGACAGCAGCCCACGGAGCCCCAGACAGACTTCAGTGACCAGCACCTTGAATCGACTCAACAGGCAAGCCCTGAACCCCTCGGTGGAGCGGCCATCCCTGGAGATCAGCACCCCTGCCTTCACCAGCTCCGGCAACCCCGCTGTCGTGGCACAGCCGAGCGAGCACGTCTCCGAGCGCTCTCCGGCCGCCCTGGCTCAGATGCTTAGTGTTCCTGCAGAGAGAACAGTCGCCACAGAGCCTTCACCAGCCATCGCCATGGCTCTTATTAACCCGCAGTCCCATGCCATGTCTGTAGAGAACAAATACTCACGCCAGCAAGTCTCCATCAGTGTATGTGCCACCCTGTACTCCTACACCCCCCGCCGCCCGGAGGAGCTGGAGCTCCGCAAGGGAGAGATGGTGGGAGTTTATGGGAAGTACAAGGAGGGCTGGCTCAGAGGCCTCTCCCTGAGAACGGGCAAAATTGGCATCCTCCCGGGTAACTATGTCACCCCGGTGCTGAGAACGTCGGCCAGGTTCTTTGATCCCCAGTTGGCCCCTGCCGCCCCTGCCGTGTCAGGGAAGAGGCCCCTGTCATCCGCACCGCCGGCTGCAGTGCTTGCCCTGGATAGAGCTGCTCCAAACGGGACGACGCGGCCAGTCAGCCAGGTGCACTCTGTTGCCATGGCAGCCCCGGTGATGTCAGCCGGCGCAGCCAGAGCGGCAGCCCAGCAGGAGGGGGCTCTAGGGAGAGGCTCGGTGCGACGAGCCTTCGCTGCTCACAGGGGGCCGTCGCTGCCGAGTAATGGCTCTGTACGTCAGGCTTCCTCAGCTGTTATCCGACCCCAGCAGCCTCAGCCCTGCGGGACCACAGCACAGACTCACAGCATCAGCCCTGCACCTGTTACAGCTGGAGTGAAGCAGAACCAACCCACCCACTCTGCCAGGCCTCTGTGCTGGGTTACTGAGGCCACAGCGCCCTCTGCTggaaacacactgacactggacACCAGAGACACTGCTGCCAAAGAAGCACCTAGTAAAGCACCGCCAGGGCCTCCGCAGTCCATCTTGGTTAAGCCAGACTCCtacaaaagtatttttgaaaagAGCAGCTCTCAGCCACCAGCAGCACAGAAGAGCCCCACCCCAAGGCCGGGCCCGTCCGTGCAGGAGCCCCGGGGCAGCCAGGCCACTGTCTACCAGAGCAGGGGGGCAGTAGGCACAGATGCTAAGATTGTAACACTCAAGAAGGGCAGCTCACTGGACATCTCTAGTCCAGACTTCCCTCCACAAGGCCAGAAGCCATCTTCCAGTGCCAACAGATACAGGGTGGCAGTGCCCTATACAGCTCAGAGTGATGCTGAACTGCACCTGAAGGAAGGAGACTGTGTCCAGGTACAGAAAACACGACCAGAAGGCAGGCTACTGGTCACCCAAGAGAAGAGTGGGAAAACCGGGCTCTTCCAAAGTAACATCTTGGAATTTCTAGAGAAACAGAGCTGACTGATCTGCACCTTTTAAGATATTTGTTCTCAGTTTGTGAAATAGTTTGACACAGAAGGACCCTTTTTCAATATAGTAAACGGGTGtccaaaacacttaaaatatgttttgatgtTTATCACTGTTAAACACAACTGCACTACTATAGTCATCAAAGTCTGTGTGAACTGGGCCATGAAATCCCTGCCACTGGTTTACAAACGGAGGAATCCCTAAACTATGATGTGGGGCAAAATACTGATATAGAGTAAGCTGGGCTTGGGCCAGCCCATGTTTTTACAGCATTAAAGGAAGTGAACTCTACCTCCAGTCTGCACATACCAGATTCTGTCCAGTCAGCACCCCTGTTGGAGTGAACATCCCCTCTCACTAGAAGCGTAATTGTTACTATACATCTCTAAGCTGGAGGTGGTGGACCTgggtagagatgctgattttgGACTGTACGCTATGTGATAGCAGAGTCTCTTGCCTAATACCTTTCACATTATACAGATTGCctaatatttcaaatgcagcCCACAGTGCCTACTTTGAATGTATAATTTAGCATTATATTTTCACACTGGGTATTTTTCCATTGTAAACGATGGCTGTACAccaaagtttaaaatacatcatcATTAATCTGGACATTTGTAAGCTCATTGTAAACGTAATCTACGCTACCCTTCCCAGTGCATGGACATGGCAAAATCTGGTGGGGAAAACAGTCAGTGAACAGTTTGTTTTAGTGCCTTGCAAGCCATAATAtctatttaaatggaaaactgaaaatgtgtatttctgtgaCTCAAGTATACATTTggacatttacattattatttatatttaggaTCCTAGTTATTCTTCCATGCACTTAAAATGCACCTTATTTGTGAGGTTTCTGCCTTACCAGGAGGTAGAGTCTTTGATGTAACTGGACTATTTCAAAGAAGGGCTAGGATGATCCTAAACTCCTTATCCTTTTACTGCACTTTGAACCATATCACTCAGTGCACAAATATACACcaacaatcattaaaaacatgaatgccaTTTATGAATGCTAATATGTATCATACTGTGGTCATCATAACAAAgctgtacatttgtaaaatgcacaCTTTAACAGATGGGTTTCTTAAACTCATGACGACAAGTCCAACATAttgcaatagattacattaaaatacattttattcttatGATACTgcaataatgttaaaaaaaattaacaaaggAATACtagaatttgttttgttgaatgcGTAACAATCAGTGTGTCAAAACTGTCCAGAAGTACCAAgaaataaatttaaatgcatgcaagtctaacactgaaatcaaaagagaaaatgtgaGCTATTGTGGGGTATGTGGAAAGTGATGAGGAAGTCAAAAGTGACACTAGCAATACTAATGTTAACTTGCCAAGTTAATAAGTAATAGCAGTAACTTAAATATTTTTGATAAGCACAGACAACAAGCAGAATATTGTTTCAACAGTTCATACTTCACACTGGCTTCATCTGAGTAAAATGTCTAAGTTAAATATGTTGTCAGCCTTCTTAAATGTCAAAATGCCacagaatagaatagaaaagaCTATGTAAATATACACTTGTAATATAGATCTCCATGAGAAATTCCATCCTTTGTCATTGAAAgttgaatgtgaaatatttatgaaatgctATGGGGGGGAGGATTTTCTCCAAATGAAATGTCTAGAAGAGATGAAACTTTTGTACatttgagaaaatgttttttaatatggagGGAGATTTAAAGGAGTTTGTTACCAAGTGCATACTGGACAAGGTATGGACAGGtcagcagtttttatttttaatttcagaaaataaaactaaatatgtttgcatgttttcaatTTCTCAGCCATGTTGTCTACTGCTCCTAAACATCTGATGCTGCATTCATAAAACATAAGTGTATAAATActgattaaactgttttgtcACAATTAAGCAAGATCTGAATGGATTCTATCACCACCCATACTCTGTACCTGATTATGAATACATCACAGAGATTTCAAAGAAAATTagatttcattttctgtaataagCTAAATTGAAAGGGAAAAGGTGAGCTGTCTGATGGACCAGGAGAATCAGGAGCACTCAAGGGTTGTTGAAACGTGGTAGATCTGTGTCCTTATTCTTCTCTTTAACTCTCGGATCATCTGGCAGACTGCTAAGGGATAGCAAAAGTACACTGCGGCCCAGTCCCCACAGACACTGCCCTGTAGTTTGTATCTTTCCCTAATCCCTACGCGCATGGCAAACGTGGAACCCGGGAGCAGCGGTAAGAACAGGCACTCGCCGTACTGGTTCGCCAAGCTAAGGTCCAAACAGCAGGGGGACACTGCACCCACAACacAGATGGTCTTGTCGCTGCACACATTGAAGAGGCCCGTGCTCCAGTCACCCCCCGTCTGAGTGATGGTCGTCACAGTGGTCGTGGTGACGCCCAGGCCCGGCTGAGTGACGATAGGAAGGTCTGCCATCGTCCCCGTATATTCAGGGACCAAGTCAGTCAGATACAAGAGGCATCGGAGTCTCTCAAATTAAGCCTTGCAAGCAGAAAGGCAAGGAAAATAAGCACAATTATAGTTATACactatttgtatgtaattaaagaaaaaatatatatcatgctgacagaattaaaaaaaa

Function

GO: NA

KEGG:

id description
K12171 SH3RF, POSH; E3 ubiquitin-protein ligase SH3RF

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132092 lncRNA downstream 83524 16893960 ~ 16895074 (-) True G105607
TU132017 lncRNA downstream 253445 16655247 ~ 16725153 (-) True G105553
TU131928 lncRNA downstream 731297 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 740913 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 837260 16139099 ~ 16141338 (-) True G105454
TU132221 lncRNA upstream 305286 17309790 ~ 17312068 (-) True G105701
TU132276 lncRNA upstream 554898 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 554898 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 559665 17564169 ~ 17566963 (-) True G105761
TU132306 lncRNA upstream 741145 17745649 ~ 17751099 (-) False AMCG00011313
AMCG00011290 mRNA downstream 17686 16943932 ~ 16960912 (-) True AMCG00011290
AMCG00011291 mRNA downstream 42756 16934506 ~ 16935842 (-) True AMCG00011291
AMCG00011292 mRNA downstream 58404 16910320 ~ 16920194 (-) True AMCG00011292
AMCG00011286 mRNA downstream 174308 16776351 ~ 16804290 (-) True AMCG00011286
AMCG00011282 mRNA downstream 214103 16753656 ~ 16764495 (-) True AMCG00011282
AMCG00011297 mRNA upstream 143511 17148015 ~ 17159586 (-) True AMCG00011297
AMCG00011299 mRNA upstream 169193 17173697 ~ 17203530 (-) True AMCG00011299
AMCG00011301 mRNA upstream 307947 17312451 ~ 17342762 (-) True AMCG00011301
AMCG00011304 mRNA upstream 375222 17379726 ~ 17395987 (-) True AMCG00011304
AMCG00011303 mRNA upstream 429998 17434502 ~ 17452768 (-) True AMCG00011303
TU132119 other downstream 17529 16958181 ~ 16961069 (-) False AMCG00011290
TU131862 other downstream 1004726 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 1004726 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1476465 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 1605419 15370402 ~ 15373179 (-) True G105290
TU132307 other upstream 725447 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 746749 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 995164 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 1179980 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other upstream 1179980 18184484 ~ 18191195 (-) False AMCG00011316

Expression Profile