RNA id: AMCG00011297


Basic Information

Item Value
RNA id AMCG00011297
length 480
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00011297
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17148015 ~ 17159586 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTCTGCAGGGCAGCACGACTTCAGTGGCCCATCACGGTGGGCATCCCCCCACTGCGACTGttgctgtaaaaacaacaaaggagACCGGGAAGGGGAGAGCGGGACTTCCTTCAACGAACTCTCCACCTCCAGCTCGGAGAGTCAGTCGGAGGCCAGCTCTCCCCAGGAAACAGTGATTTGTGGTCCGGTGACTCGGCAGCCCAACATACAGACTCTGGACCGGCCGCTGAAGAAAGGTCCagtgcagctgctgcagcagtcCGAGCTCCGCAGGAAGAGTGACCTGCTGAGGACACTGACCAGCAGCTCCCGCGAGTCCAACGTCTGCAAAAAGAAGCCCGCGAAGGAAAAACTGACCATCGAGGAAGAGCTGGAGAAATGCATTGAGGATTTccgcaaaataaaaatcccagaCAGGTTCCCAGAGAGGAAATATATGTGGCAGTCTGAACTTCTAAGAAAATACCACCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132092 lncRNA downstream 252941 16893960 ~ 16895074 (-) True G105607
TU132017 lncRNA downstream 422862 16655247 ~ 16725153 (-) True G105553
TU131928 lncRNA downstream 900714 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 910330 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 1006677 16139099 ~ 16141338 (-) True G105454
TU132221 lncRNA upstream 150204 17309790 ~ 17312068 (-) True G105701
TU132276 lncRNA upstream 399816 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 399816 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 404583 17564169 ~ 17566963 (-) True G105761
TU132306 lncRNA upstream 586063 17745649 ~ 17751099 (-) False AMCG00011313
AMCG00011294 mRNA downstream 143511 16978598 ~ 17004504 (-) True AMCG00011294
AMCG00011290 mRNA downstream 187103 16943932 ~ 16960912 (-) True AMCG00011290
AMCG00011291 mRNA downstream 212173 16934506 ~ 16935842 (-) True AMCG00011291
AMCG00011292 mRNA downstream 227821 16910320 ~ 16920194 (-) True AMCG00011292
AMCG00011286 mRNA downstream 343725 16776351 ~ 16804290 (-) True AMCG00011286
AMCG00011299 mRNA upstream 14111 17173697 ~ 17203530 (-) True AMCG00011299
AMCG00011301 mRNA upstream 152865 17312451 ~ 17342762 (-) True AMCG00011301
AMCG00011304 mRNA upstream 220140 17379726 ~ 17395987 (-) True AMCG00011304
AMCG00011303 mRNA upstream 274916 17434502 ~ 17452768 (-) True AMCG00011303
AMCG00011313 mRNA upstream 558040 17717626 ~ 17749649 (-) False AMCG00011313
TU132119 other downstream 186946 16958181 ~ 16961069 (-) False AMCG00011290
TU131862 other downstream 1174143 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 1174143 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1645882 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 1774836 15370402 ~ 15373179 (-) True G105290
TU132307 other upstream 570365 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 591667 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 840082 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 1024898 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other upstream 1024898 18184484 ~ 18191195 (-) False AMCG00011316

Expression Profile