RNA id: AMCG00011299


Basic Information

Item Value
RNA id AMCG00011299
length 843
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00011299
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17173697 ~ 17203530 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTTGAGTGGGAACTGTAGGACTTACCCGCAGACCAAAGATCCAGGGTCTGTCCAGAATTCATTCCCGGAGGTTGTGGAGCTAAATGTGGGTGGGCAAGTGTATTTCACCCGCCACACAACCTTAATCAGCATCCCCAATTCCCTACTGGGAAAAATATTCTCCGCCAAGAAGGACCCTTCTAACGACTTGGCACGGGACACCAAAGGCCGGTACTTTCTCGACAGGGATGGGTTTCTCTTTCGGTATGTCTTAGACTATCTCAGAGACAAGCAGGTCGTCCTACCTGACCACTTCCCCGAGAAAGGCAGGCTAAAGAGGGAAGCGGAATACTTCCAACTGCCAGAGCTGGTGAAGATCTTAACCCCCGATGACCTGAAGCAGAGCCCAGATGACCTTTTCCACAGTGATTTCGAAGAGGCTTCCCAAGGCAGCGATCAGCGGATATGCCCGCCATCATCACTGGTGCCAGCCGATCGGAAATATGGTTTCATTACAGTGGGGTACAGGGGGTCCTGCACCATGGGCAGAGAGAGCCAAACTGATGCCAAGTTCAGAAGGGTGCCGAGGATCTTGATCTGTGGGAGGATTGCCTTAGCGAAAGAGGTCTTTGGGGACACTTTAAACGAGAGCAGGGACCCCGACCGACCCCCAGAGAGATACACGTCCAGGTTTTATCTGAAGTTCAAGCACCTGGAGAGAGCTTTTGACATGCTGTCCGAGTGTGGATTCCAGATGGTCGCCTGTAACTCGTCGGTGACGGCTTCCTTTGTCAATCAATACACAGAGGACAAGATCTGGTCCAGTTACACAGAATATGTCTTCTACCATGTGAACTGA

Function

GO: NA

KEGG:

id description
K21918 KCTD8_12_16; BTB/POZ domain-containing protein KCTD8/12/16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132092 lncRNA downstream 278623 16893960 ~ 16895074 (-) True G105607
TU132017 lncRNA downstream 448544 16655247 ~ 16725153 (-) True G105553
TU131928 lncRNA downstream 926396 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 936012 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 1032359 16139099 ~ 16141338 (-) True G105454
TU132221 lncRNA upstream 106260 17309790 ~ 17312068 (-) True G105701
TU132276 lncRNA upstream 355872 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 355872 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 360639 17564169 ~ 17566963 (-) True G105761
TU132306 lncRNA upstream 542119 17745649 ~ 17751099 (-) False AMCG00011313
AMCG00011297 mRNA downstream 14111 17148015 ~ 17159586 (-) True AMCG00011297
AMCG00011294 mRNA downstream 169193 16978598 ~ 17004504 (-) True AMCG00011294
AMCG00011290 mRNA downstream 212785 16943932 ~ 16960912 (-) True AMCG00011290
AMCG00011291 mRNA downstream 237855 16934506 ~ 16935842 (-) True AMCG00011291
AMCG00011292 mRNA downstream 253503 16910320 ~ 16920194 (-) True AMCG00011292
AMCG00011301 mRNA upstream 108921 17312451 ~ 17342762 (-) True AMCG00011301
AMCG00011304 mRNA upstream 176196 17379726 ~ 17395987 (-) True AMCG00011304
AMCG00011303 mRNA upstream 230972 17434502 ~ 17452768 (-) True AMCG00011303
AMCG00011313 mRNA upstream 514096 17717626 ~ 17749649 (-) False AMCG00011313
AMCG00011311 mRNA upstream 558380 17761910 ~ 17773165 (-) True AMCG00011311
TU132119 other downstream 212628 16958181 ~ 16961069 (-) False AMCG00011290
TU131862 other downstream 1199825 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 1199825 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1671564 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 1800518 15370402 ~ 15373179 (-) True G105290
TU132307 other upstream 526421 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 547723 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 796138 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 980954 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other upstream 980954 18184484 ~ 18191195 (-) False AMCG00011316

Expression Profile