RNA id: AMCG00011303


Basic Information

Item Value
RNA id AMCG00011303
length 2081
RNA type mRNA
GC content 0.56
exon number 8
gene id AMCG00011303
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17434502 ~ 17452768 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCTCAGCTGGGCCAGACCATGGGACTTGCATGTTTCAAATCCTGGAAATATAAGAATGTCACCCATCAAGATGGGAACCGAGATGTTCTTGTTAGCCCTGGCTCCTACTTCTTCATGTCCAACAGCAATGGGCAAGGGGAGGAATGGCTGAAAACACTCAACAAGGTGGTCTGGCTGCCATTCACAGCAAAGACACCAGGCGCATACTTCCATGCAGAAGGAGATGAAGAAACCAAGGCTAACAGAAATGGTCTATCTCCCCCCCATGCCCCCTCAAACCCCCACCCTTTGCCACCAGGTGTGTTTGGGCAGCGCCTGGAGGACACAGTGCAGTATGAGCGGCGCTATGGAGACAGGAAGGCCCCCCTGATTGTGGAGCAATGCGTCAGCTTCATTCAGACCCACGGGCTGCTGGAGGTGGGGCTGTTCCGGCAACCAGGCCAGGCCACCCTCGTTAAAGAGCTGCAGGACGCCTTCGACGCCGGAGAGAAGCCCTCCTTCGACAGCGGGACAGATGTGCACACGGTGGCCTCTCTCCTCAAGCTGTACCTGCGGGAGCTGCCAGAGCCCGTGGTGCCGTTCTCCAAGTACGAAGACTTCCTTCTGTGCGCCAAACTGCTGTATGGAAACAGAGACGAGGGTTTGTTGGATCTCAAGAAGCTCTTACAGGAGCTCCCCAACCCAAACTTTAACCTCTTGCATTACATATGCAGgtttttaaatgaagttCAGTCCTATTccaacataaacaaaatgagcaCCCAAAACCTGGCTACAGTGTTTGGCCCAAACATCCTGCGCCCGAAGGCTGAAGACCCTGAGACCATTATTGGAGGGACGGCCCTGGTACAGCAGCTGATGTCAGTACTGATCAGTGAGCACAGCAAACTATTCCTCAGAGAAGGGGAGGCTCGTGCCCAGGATTCCTTGCTTGAGACTCAAGGACAGCATGCAGACAAGGCAGACCCGGCTTCCCTTCACTCCTCCTACCTCGCTTCTGCCAGCGACACACCGTGCCTTCCCAGAGAACCACCGCTTGTTCCTGGAGGCTGTGTCCGCCAGCTCTCGTTGCCCCTCATTGCTGCCAGGAAAGGATTACCAAAGAATCTGACACAGGAGGACCGTTCTACCAGCTCTCAGTCACACATAACTACAGCAGGGCCCAGATGTCCCTCAGAGATGGAGACCCCAGTGTCTGAGGAGCCCTCCTCTGGGAGTTTAAGTGACCCAGTCTATGACAATTTCTGCCCAGGCTTGGCGTGTCAGGTGAGACTCGACTGTCACTCTGAAACAGCGACTAAAACGGGAGCGACTTCCCGTTCAGCAACCCCTCTCCCTGCTCCTAGGGCGACAGCAGCTCAGGATGGCTCTTTTCCAAATACTGTGAACCCACACAGCAGCTGGGGCGATGAAAGCCTCCGCACAGAGAGCTGGGCAGTGGGAGGACACCAAAGCAGTCCTGAGGAGGGACAGCAGAGCAAAACGTATGAGAGCACGCTGTCCGTGTACGACAATCTAGACAGCGAAGTGCTGCCAGCGAAGCCAGGAGACATGACCAGCGTGGACAGTGCCTCCTGGTCCTCCTGTGAGATTGTGCTGGAGGAGACGGCGGGGAGGTCCCAGTTCTCCTCCTACAGGACAGATCCCGAGGAGCCCCATGCATCTTCCTCGCTGCAGCTGGACTGCACTGTGTCCGAGAGGCACGGGAGTGGGAGCAGCGAGGTGTTCATGGCGCCTCAGGACACCGGCACGCCCCCCAGCTCTGCTGCCACACGCTACCTCCTTGCTGGACTGAAGCAGCAAATGGCCAAAGAGAAGGCAGAATATGAAGCCCAGATCAAAAGTCTGGAGCAGCGGAACGAGGAGCTGAAATGTGAGGTGAGCGGCCTGCGTGCCAACCTGGAGCAGCAGAGGCGCTGGTACAACGTGGTGGAGATCAAAATGAGGAACGCTGAGCGCGCCAGGGCGGACGCCGAGAGACGTAACGGCATGCTGCAGCGCGAGATGGAGGAGTTTTTCGACACATTTGGAGAGCTCACTAACGAGGTGAAGAAGACCAAGAGGATCGTTCAGAGCTTC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132221 lncRNA downstream 122434 17309790 ~ 17312068 (-) True G105701
TU132092 lncRNA downstream 539428 16893960 ~ 16895074 (-) True G105607
TU132017 lncRNA downstream 709349 16655247 ~ 16725153 (-) True G105553
TU131928 lncRNA downstream 1187201 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 1196817 16236128 ~ 16237685 (-) True G105473
TU132276 lncRNA upstream 106634 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 106634 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 111401 17564169 ~ 17566963 (-) True G105761
TU132306 lncRNA upstream 292881 17745649 ~ 17751099 (-) False AMCG00011313
TU132302 lncRNA upstream 294707 17747475 ~ 17751099 (-) True AMCG00011313
AMCG00011304 mRNA downstream 38515 17379726 ~ 17395987 (-) True AMCG00011304
AMCG00011301 mRNA downstream 91740 17312451 ~ 17342762 (-) True AMCG00011301
AMCG00011299 mRNA downstream 230972 17173697 ~ 17203530 (-) True AMCG00011299
AMCG00011297 mRNA downstream 274916 17148015 ~ 17159586 (-) True AMCG00011297
AMCG00011294 mRNA downstream 429998 16978598 ~ 17004504 (-) True AMCG00011294
AMCG00011313 mRNA upstream 264858 17717626 ~ 17749649 (-) False AMCG00011313
AMCG00011311 mRNA upstream 309142 17761910 ~ 17773165 (-) True AMCG00011311
AMCG00011315 mRNA upstream 331272 17784040 ~ 17785842 (-) True AMCG00011315
AMCG00011314 mRNA upstream 334152 17786920 ~ 17793506 (-) True AMCG00011314
AMCG00011316 mRNA upstream 727878 18180646 ~ 18190597 (-) False AMCG00011316
TU132119 other downstream 473433 16958181 ~ 16961069 (-) False AMCG00011290
TU131862 other downstream 1460630 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 1460630 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1932369 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 2061323 15370402 ~ 15373179 (-) True G105290
TU132307 other upstream 277183 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 298485 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 546900 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 731716 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other upstream 731716 18184484 ~ 18191195 (-) False AMCG00011316

Expression Profile