RNA id: AMCG00011304


Basic Information

Item Value
RNA id AMCG00011304
length 6276
RNA type mRNA
GC content 0.49
exon number 37
gene id AMCG00011304
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17379726 ~ 17395987 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttaagaAGTTCCAACACCACCCCGCAATGGCGGCAGTAATGATCGATTGCGAGCCGGACCACATCGCGACAGAGCACACACATGCTGTGTCTCCCAAATCACGCAAAgttttttttttcacagattacCCCTATCTGACAGCGCTTGTGTACATCTTGGATGCTGTCTTCATCTTGAACATCGCCTCTCATTTTTACATTGACTTTGAGTCTGAATGGCGCACTGTCACCAGTCAGGTACGAGTCCAGTACCTCAAAGGCTGGTTCCTGCTTGATGTGCTGTGCGTCCTTCCCCTCGAGTTGGTGATGTTTCAGTATGGATATTCCTTCTATTTTTACCTAAACCGTGCTCTGAAGATCGTTGGGTTGTTTCACTATATGGCATCCCTGGAGAAACATCTGGATGTCAATAAGGTGTACCTGGCGGCCTTCAGATACACCTGGGTTCTACTCCTGTGTATCCAGTTTGCAGCGTGCGGCTGTTACGGTGATATCTATCCAACCGACCTGGAAGAAATGTTTTACACAACCTTTTGGATGGTAGTTGGATTGGTAGCCATTACTGGGCACATTGTAACTGGCATGAGCTCAATTTGTGCCAACCTTGATGCTCGCAGAGGGCGTTTTTACCATCGTCTTCAGACTATCAAGACATACATGagAGAGACAGGCTTGCCTCTAGACATGCAAACCTGGgtttatgatttttatatttatctatgGAGACATCAAAAGGGCAGCGTATCCAACAAATTAGTGGAAGACCTCCCCTTTAATCTGCACTCAGAAATCTCCTCAGAGTGTCACCAGGCAATTCTGAGACAAGCCGCTCTGTTCCAGGACACTGGCGAAGCCTTCCAGAGGGTGCTGTCAGTCAAACTTAAAACCATCACCTACAGCCCTGGGCAAATCCTTGCCAAGGCAGGGGACATTGTTCAATCCATGCACTTCATTCAGCATGGGCGTGTACAGGTTTATCTAACGGGTGAAATTCCACGAAATGTCACAATTGTTGCTGAGACCGTGTGTGAGGCCTGTGTGCTGGAGCTCAAAGACCTTGGCATGGAGTTTGCACATTTTCCACAAGATCATGCGACGCTCAGACGCACAGCAGAGCAGCTCCTTCAAAGCATGTCCCGTCCAATCATGAGCGCAGATGATATCGGGGTAGCCACCAATCCCCAGAGCGTGATCATGGACAGGGATCTGTCCGGTCATCCAATACCCTTTTGGAAGAAGACGATAAGCCCAGACTGCAAGTTTGTCCAAACATGGGAAATAGTTACCTTTTTGTGCTTggccatttttgtatttatacagtTGTGGATGGTGTTTTTTACACACTATGATGGGACAGCAGGGTTTCAAAGTGAAGGTCGGGCAGAATTTTTCCTGGCAGTGAGCTGGATTGCTGATGTTGTAGCTGTTCTGGACATCGTCTTCCGCTGTTGTACGCAGGTCCATTCTAATGATGGCTACTTATTAGAGTTTAAAAGTATCTTCAATCACTATGTGCACTCCTGGGATCTGGTTTTCGATGTGCTGACCTTCTTCCCTTTTGATGTGTTCTCCTTCTTCACGGCTCAGAAGCAGTGGGCTGTGTTCAGACTGAACCGCCTGCTATGGATTCGGAAGctgttttcatttttcgcaaaaaatgaaaaaaacccAGAGAAGAATTGGATAGAGTACAGGACAGCGAAGTGTGCATTTCTTCTGTTACTTGCTGTGCACTTTTGCGCCGGACTTTTCTACCTGCAAGGCTGCTATTATACAAGGTGCGATGAAGACACCTGGGCGTGGGATAATGGACTTGGAGCATGCCAGTCCCACTTCTACCACTACGTCGTCACATTCTACTGGGCCATAACTACGATGACAACCACAGGGTTCGGTGATATTACGGCCAGCACTCTTTCAGAGCAGATAGTGACCATCTTTGTGTGCATCATCGGGCTCTTTGTTTTCAACTACCTCAATAGCCTAATTTCTGCCACACTGGCAAGTACAAATTCGGCCAGgtTTACCTTTCAGGACAATCTCCGAGCCGTGACCCAATTCATGAAAAGCCACAAGCTCAGCCAGTCTCTGCAGGACAGGGTGATAGATTACATGAGCCTTCTTTGGGAGAAATACCAGGGGCAGGCGTTCCCAGGCAGCCCTTTCCTGATGCATGACCTGCCCAGTGAGCTGCAGGAAGTCATCCTCATGGAGGAGCGAGGCAAGCTTCTGTCCAAGTACCGTTATTTTAAGGAAGCTGGAGATTCATTAATTAGGGATATTGCCACAGTATCCACAATGTACTTCTATCCCAGAGGAGAGATCATACAGTACAAAGACTGCATCACTCGCGAGCTCTTCTTCATCAAGGAGGGAACTTGTCAGATCTTAAACGACAATTTCTCTGACATTATGGGATTTCTATGCGCAGGAACATATTTTGGAGAGggCGGGTTCTTATATGGGAAACCAGCACAAAGGATTGTGCGTGCCCAAACAATGTGCCAAGTTATTGTCATTGACTTTGACAGACTGAAACCAATTCTTGACAATCATCCAGTCATTAAAAGccAATTCGAAAGACTGCAGGCAGAGTGTCTTCAGTCCTCTGAATGTGTATGGTTGAGAAAGGAACCACAgataattaaaactgtaaaccTGTCGTGTGTTGGCCGCCAATTCCACGAGAAGTCCAAATGCTACGTAGAGGACTTTGGCATCTTCGAAATGTATGCGGGCAATGAAGAGGAGCATGTGGAGGCTCTCAGGCAGACCAGTCAGACTCAACCAGAGCGTGCTATAATCCCCAACGGCTCACGTCTTTTCTGGTGGGAGTGTTTCCGTCTCCTCCTGGCGTTAACGATCTGCGCTGTGTCTTCCCTCCTGTGGTCATTCCTGCACTTTCAGCAAGACCTTTGGAAAGCCTTAGTCTTCCTGCTGATCGTCTGCTGGATTGACATGTACATTCGGCTACATGTGGCGTTTTCTCGGGGCTCCAGGGTGGTTGTGGATACCGTGGAAACAGCCAAGCAATACCTGAAGACCGGCTTCCTGATGGACTTCGTGAGCTGCTTTCCGTGGGAAGTGTTTGGCTTGATGGCAGTATCTACATATGATGACAATAACACATTCTTCAACAATACAAGAGCACTGCACATCATTGCCTTCTTCAGTTTACCCCACATGCTGCAGCTGTATCGAGTCAACTGCACGTTTAAGCACTGGCAGGCCGGAGTCGCAACAGAAAAGACGGCAGTGAGTTTATTGAAGTTTTGTTTGTACGCCATGCTTTTTCTCCACTTCTGCACCTGCGTTGTGTTTGCAGCAGTTTGCCCTCCTGGGACAGACTTCAGCAGTAAGAGTGGAGACAAGTACTTCCTGCCAAAGATCCAACACAACTGCACTGCAGACTCCTGGGTGATGCACTTGGACAATTTATATGGCCTCGATTTTGACACTGTGAGTTTCCCATACCTGTACACAATCTCTCTGTACTTCATCACAGCAACCGTGACTACTGTTGGCTATGGGGACATCTCTGCGTGCCTGCTCTCCACGAAAATCATTGTGTCTGCGATAATGGTGTCAGGACCCCTGTTCTGCGGCTGGGTCGGGGGGTCCATGACCTCCATACTGGCCAATGCTGATGCTCCCAGAGTTGCCTTTATGGAGAGGAAGGATGGAATCAAACACTTTCTGGAGGTACAGCCTGTGCCCACTGTATACAATCCCATTATTGCTAAGGGGATCCAATGGGCATGTCCTGCTAGTCCTCTTCAGTGGTGGCTGGAAACTGAGCAGGGTTTAAGTGTGACTGTGAGAGGAAAGATGCTTCCTGTTGTTCCTGTGAGCTGGAGTAAGTGCCCAGCACACTCTGAACATAACACACTGTCCCTGTTTCAGAGAAATGGTCTGACCGGAGACTTCTATGAGAACATTATCCAGTTTCTTGAGTCCAAGTGGAGGCGCATGCATGGAATTGATCAAGACTCACTGTTCCGCTACCTGCCGTCTTCGCTGCGTGGGGATATTTCCACCTTCATGTATGCAGACCTGATCGCAAAGGTAACATGTTCATCAGCTCGTAAACATATCACTCAGCACTGCGCTCCTCTCCACGTCCCTAATGACACGGGCATGAGAGCAGGGTTGGGTCTGCACCATCATTACCCCTATGAGCCATTCAACACGGGATTGCCTTCCGATGCTTTTGGAATCCAGTTCAGATTCCAGAGGAGGGTGAGACATGAGGCTATCGAGTTGTCCGATCAAATGCTCCGGCTGTCAGGGAAACTTGACGGGCCAATCTTCCACAAAATGCTGCGAGCAGAGAGCCTGGAGAAGCTCGAGTACGATGGCGGCATCACTCGCATGCTCTCCAGACAGGTCCGGCACCGCTTCTTCAGAATGGGCAACATCGTGTATAAGAGGGGTGACTGTGAATCGGAGatgtttttcattCAGAAAGGAGAGGTGGAGGTTTTGGCTGGTAATGGAGGGACTGTTTTGTTCACGCTGAAAGTGGGACAGTACTTTGGAGAGGACAGCTTCCTTCACTCAGAGCCCCGTGCAGCAACGATCAGAGCTGCTTCAAATTGCGATCTGTGTGTCTTGACAAAGAAGAGCTTTGAGGAAACTTTTCAATATTACCCAGACATCTACCAGGAGTTCAAGCAGGTTGTAGAGGAAGTAGGAAAGGAAATCCAAAAGACTAAACTAGAGGAAATTGCCGCCAGGTCCCAGCTGCCCTTCAGCAACCAAGACCAAACCTCATCATGCCACCAGAGACCAGGCCTTCTTGAATTGTATGAGCAGTATGCCAGGGCTGAGGCACTGGAGTCCAGCCTGCCACTCTGGGTTCGCCTGGGCCATCGTCTGGGCAGCGCACTCCTAACATGCTGCAGAAACACGTGGCGCTTCATACAGATGATCCGCAGCAAGACCATTGATCCGAAGAACCCCGTCTTGCGCTGGTATCAGTATTTCTCTGCTGTGGTGACTGTCGTGCACTTCTGGTGTGTCACATATATGCCGGCTGTTTACAATGCTGATGTGAATCTCTATCTGTTCGCCAGTGTCGTTGAGTACATCCAGTTCGTGGAGgTTTTAGTCATCATGAATATCTGCTACTATGATGAAGATGGAAATTACGTCTCAAATCGTAAATCTGTGGCGAGACACTTCTTATGGAGGAAACtgggctttttcttttattttgtgagcTCGTTCCCCTATGGTGCCACCGTGTTTCACTTGGCCACCCAAATGCCTGCTGCGAATTACCTGGCTATCTTTGTGTGGGTCCGTGCTGCTCAGCTGGTCCGGATTTTCTCTGTTTTAGTATTTCTAAGACAGGAAGAAAAGGCCATAACTTCAAGCCTCCTGGCAATCCGCCTGCTGAAATATCTTGTGCACTTCCTCCTGCTCAATCACTGCTGCGCTCTCGTGTTTGTGGCGCTGAGCTGCCCAAGCATGTGCATCCCAGGGTCATGGTACCAACAAAAATTCACAGACCTGTACTTGTATTCAGTTTACTGGACTTTAACAACCTACACAAGTACAGGCTTCGGTGATATTGTGGCCATGACAAAGAGTGAGCTCTGGTTCGcaattgttttctgcattttggcCAAGGTACACATTGTGTACAACCTGGGAATGATCTTCTCGACGCTGGCCAACAAGCATGTTCTGCAGGTGGCCAACAAAGagaagctgcagGACATAAAAAGCGTCTTGAGGGATAATAACATCTCCCCCAAGTTACGAGACAAAATTATACACTATTTCAAACACAAGTGGATCTGCACTAGAGGCAGGAACTCAGAGACGATCTTTAGGGACATTCCCCGATATATGAGGGCAGACATATTCGACCGGACCGGTTTAGAAGCTCTTCAGCAGCATGACGTCTTGGCCAAGATGTCAACACCCTTCCTGGAACACCTCTCCACCACAATGCGGCTGCTGAACTTCACTCCAGGGGAATACCTGGCGAGGAGAGGAGACATTGCCACGCAGATGTTTGTGGTGGTGAATGGGACGGTAAAGGTGGTCAGGAACGGACAGGTGGAGTTTCTGTCAACGGGCGCAACCTACGGGGGCAACGAGCTGGTCCTACAGATGAAATACAGAGAGTCGTGGATATCTGATCTATATGTGGAAGTCCTCGCTCTCCTGGAAGACGACTTTTTTGCAGTGGCCTCCCTCTACCGGTATGACATGGACTCCCTCAACATGCAGTCCATTGTCCCGCAGGCAGACAGTCAGCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132221 lncRNA downstream 67658 17309790 ~ 17312068 (-) True G105701
TU132092 lncRNA downstream 484652 16893960 ~ 16895074 (-) True G105607
TU132017 lncRNA downstream 654573 16655247 ~ 16725153 (-) True G105553
TU131928 lncRNA downstream 1132425 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 1142041 16236128 ~ 16237685 (-) True G105473
TU132276 lncRNA upstream 163415 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 163415 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 168182 17564169 ~ 17566963 (-) True G105761
TU132306 lncRNA upstream 349662 17745649 ~ 17751099 (-) False AMCG00011313
TU132302 lncRNA upstream 351488 17747475 ~ 17751099 (-) True AMCG00011313
AMCG00011301 mRNA downstream 36964 17312451 ~ 17342762 (-) True AMCG00011301
AMCG00011299 mRNA downstream 176196 17173697 ~ 17203530 (-) True AMCG00011299
AMCG00011297 mRNA downstream 220140 17148015 ~ 17159586 (-) True AMCG00011297
AMCG00011294 mRNA downstream 375222 16978598 ~ 17004504 (-) True AMCG00011294
AMCG00011290 mRNA downstream 418814 16943932 ~ 16960912 (-) True AMCG00011290
AMCG00011303 mRNA upstream 38515 17434502 ~ 17452768 (-) True AMCG00011303
AMCG00011313 mRNA upstream 321639 17717626 ~ 17749649 (-) False AMCG00011313
AMCG00011311 mRNA upstream 365923 17761910 ~ 17773165 (-) True AMCG00011311
AMCG00011315 mRNA upstream 388053 17784040 ~ 17785842 (-) True AMCG00011315
AMCG00011314 mRNA upstream 390933 17786920 ~ 17793506 (-) True AMCG00011314
TU132119 other downstream 418657 16958181 ~ 16961069 (-) False AMCG00011290
TU131862 other downstream 1405854 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 1405854 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1877593 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 2006547 15370402 ~ 15373179 (-) True G105290
TU132307 other upstream 333964 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 355266 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 603681 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 788497 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other upstream 788497 18184484 ~ 18191195 (-) False AMCG00011316

Expression Profile