RNA id: AMCG00011313


Basic Information

Item Value
RNA id AMCG00011313
length 1023
RNA type mRNA
GC content 0.59
exon number 11
gene id AMCG00011313
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17717626 ~ 17751099 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGGAAGAGTACCTGTCCATCAGCAGACCAGGCCAGGGAGGTACACTGGGGGGGCTCGGCCTTGCTGCTGGTGCTGATCACCTCTTGTCTCAGCTCATCCACAATGATCTTGCCTTCCAGCGGCTCCAAGAGCGGATAACTGGCATTAATGCCCAGAACTGCAAGATTCCCACCGACGCTTACCCAGATCTTGATGCTGGGGCCAGTGGCAGCACACAGCCAGTATCTGTTGGGGCTGAAGCACAGAGCACTGATGGTGTCTCCGCCATCCAGGGTGTAAAGATGCTTGCCCTCGTTCAGGTCCCACAGCATTGCCTGGCCGTCCTGCAGAGGAGAGGATGCAAGAGCAATGAGGCACACAGGGAGCCATCGGGGGAGACAGTGACGGTGTTCAGGAATCCGGTCCCAAAGGCGCAGGGTGCCATCCCAGGACCCAGACAGGGCGAACTGTCCGTCAGAGGAGATGACCACATCACTGACAAAGTGCGAGTGACCACGCAGGGCTCGCTGGGGGATGCCATAGTTGGTTTCATCACGTATTTCAAGGGCGAATCCTTGACTGTTATGGCAGCACCTCCAGACTCCCTTGTGGCAGGAGCTTCTGGGATCGATGGGGAAAAGGGTCCCAAGGGCTCAAAAGGAGACAGTGGAAGTCATGGCATACCTGGCTATAAAGGCGAGAAAGGGGAGATGGGACTGTCCGGGCCTGCGGCTCAAATGATCTCCCAACCTGGCCCCCCTGGCCCACCCGGCCCCCAAGGACCCATGGGTGATCCAGGCATGGACGGActcaagggagagagaggagacactgGAGAGAGGGGCCCCATTGGACTGCGAggCTTCCCTGGACTTCGGGGTGAAAAGGGTGATCGAGGACTAAAAGGCGAGAAGGGGGTCCTCTGGGTCCTGGGGAGCCAGGAGGGCCAGGGGGACCAGGGGGGCCAGCCTGTCCTTGATCACCctgagaacgagagagagacgTATTACACACCAAGAGTACCGGGATTTACCTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132295 lncRNA downstream 150663 17564169 ~ 17566963 (-) True G105761
TU132276 lncRNA downstream 155831 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA downstream 155831 17559402 ~ 17561795 (-) False G105752
TU132221 lncRNA downstream 405558 17309790 ~ 17312068 (-) True G105701
TU132092 lncRNA downstream 822552 16893960 ~ 16895074 (-) True G105607
TU132315 lncRNA upstream 4678 17754327 ~ 17755758 (-) True G105774
TU132326 lncRNA upstream 47794 17797443 ~ 17800287 (-) True G105782
TU132331 lncRNA upstream 57030 17806679 ~ 17806929 (-) True G105786
TU132332 lncRNA upstream 247789 17997438 ~ 17997725 (-) True G105787
TU132341 lncRNA upstream 283106 18032755 ~ 18033145 (-) True G105795
AMCG00011303 mRNA downstream 264858 17434502 ~ 17452768 (-) True AMCG00011303
AMCG00011304 mRNA downstream 321639 17379726 ~ 17395987 (-) True AMCG00011304
AMCG00011301 mRNA downstream 374864 17312451 ~ 17342762 (-) True AMCG00011301
AMCG00011299 mRNA downstream 514096 17173697 ~ 17203530 (-) True AMCG00011299
AMCG00011297 mRNA downstream 558040 17148015 ~ 17159586 (-) True AMCG00011297
AMCG00011311 mRNA upstream 12261 17761910 ~ 17773165 (-) True AMCG00011311
AMCG00011315 mRNA upstream 34391 17784040 ~ 17785842 (-) True AMCG00011315
AMCG00011314 mRNA upstream 37271 17786920 ~ 17793506 (-) True AMCG00011314
AMCG00011316 mRNA upstream 430997 18180646 ~ 18190597 (-) False AMCG00011316
AMCG00011318 mRNA upstream 446892 18196541 ~ 18197251 (-) True AMCG00011318
TU132119 other downstream 756557 16958181 ~ 16961069 (-) False AMCG00011290
TU131862 other downstream 1743754 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 1743754 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 2215493 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 2344447 15370402 ~ 15373179 (-) True G105290
TU132311 other upstream 1604 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 250019 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 434835 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other upstream 434835 18184484 ~ 18191195 (-) False AMCG00011316
TU132457 other upstream 1352644 19102293 ~ 19105269 (-) True G105890

Expression Profile