RNA id: TU132302


Basic Information

Item Value
RNA id TU132302
length 3129
lncRNA type sense_over
GC content 0.39
exon number 2
gene id AMCG00011313
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17717626 ~ 17751099 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTAATTCAACATGTTTCCAgtatttttattaagaattgTATTAAGTTtaggaaaactgaaaacaaacctcCCTCTGATTTTGATGCACTGTCACCAGAGATCAACCACTACTAAACAAATGCTCAGGAAGATACACCAGGACCAACCACTGTGCAGGAGAAATGCCACACTCCCCCAGCCATCCACGAGATATTACACTGTAAAGAGCTGTATTTTGTATCTActgcacagaaaacatttagaaatgtatggTGTATTTCTTCAAAAATATACAGACCATTTTGGCAAAACTGGACATTTCTACTTCAGATATTACAACCTTTGGGCAACAcctattttggaaaacaaaaccttgcCAACGAACTCCAAAagataaatactttaaatagatAACCATCATAACTATGGAGTTTATATATTGTTAGaattatatttcacataacACTTGCTACAAATAACTGAGGATGACTTCTCAAGTCACTGAAaattatttctttgcagacacccttatccagggtgacttagaaaatatgtacatgttgtatatacatgtttataataGAGATGGGAGATCaaaaggttttgaaaatgtagttCTACACCTTTCTCCCAAGTGAACTGTGTTGTTCCTATGCCCCCAGGttgagattatatatatgtaatacagACGCATGAACTTTTCAGACAgcagtttaatttcaatatCATTTAGCAACCAAAAAAGTGCCTTTTTTTCCTAGGCACTTCTTCCAGcagtacaaaacaaatccaGTATTAGAGAAGTGGATCAGCTGCCAGATGGGTAAACAGAgaaaaattaagaacaaaaacaccagatctttttttttccggttatttattttttatttcaaggcTGACGGGATTTTCAGTTCTCTTCATTTTCTTAGAAAACATTTATCGGGTTCCGATGGTCACCTGCCACACTCTGATCAGGTTGTCAGTGTAGCCAGCAAACAAAGTCTGGAAgatacaaataaagcatttaaaaccaTATACAGTAATTTCCTGCATACACACCATCTGATTACTGGAGTTCAAAATTCACCCTGTAAGAGCATCTGATTAGACATTATAAAATGAGTTCAAAGGTCTATTACCACCCCCTCATATTTGCAGGACTTGTCACCAGTAAAATTCAGTAGTATCGTGAAAGGTTAAAATCATAGGGGGTACTCGGGCAACTAATTATGCatatttcatatacaaaacCAGATACTTCAATGTCAGGAAATGCACACTATTGTATCTGGTACTCTTAgctcaacattttaaaataaatgccaaacTGATTATAGAAGAGTAAGGCGATAATTTTAGTATGAATCAATCAATGCAAGTGGTATGGCAGCTGCCAACACCTGTGATCTAGTTCCAAGATACCTGACCCTGGAAATATTGTAATACCACATATGTGACTAATGACAACAATGTGGGAAGAGTACCTGTCCATCAGCAGACCAGGCCAGGGAGGTACACTGGGGGGGCTCGGCCTTGCTGCTGGTGCTGATCACCTCTTGTCTCAGCTCATCCACAATGATCTTGCCTTCCAGGTCCTGGAAAAAAAGGGCACATTTGAATCTTAGTGAGGGTATAACTCAATAAGAGCTAGCACAACAAGGAGTTTATAATCCACAAACCACTCTTTTAGCTTTTTACTccaattatattgatttaagaTTGTTGACAGATAACTGAAGGCAGACAATAGTTAATAAACTATTGTCATTTGTTGTAATGACCAAATAACTGCACTCCACACTCAATCTTCATTgagcagaaaaacacagaagttTGCTCAGAAACAGCCTCTTTATCATCATAGAATTACAGATGGCATTTGTAAGTTTCATCACTGCCACTTTGTGTTTCCTAGACAGTACAATGTAGACAAAGTACTGCTAATGCTAAAAACCTGATGCTGAATATTAGAACTTCAATATTGAATCATTTAACATTTGTACTAGACTAACAATCAGCATAACTTAATGCTCATTTCCATTTTAGTGCGCTATTCTAATGGGAGAACACGTTTTCCTGTTGACAGCGGCTCCAAGAGCGGATAACTGGCATTAATGCCCAGAACTGCAAGATTCCCACCGACGCTTACCCAGATCTTGATGCTGGGGCCAGTGGCAGCACACAGCCAGTATCTGTTGGGGCTGAAGCACAGAGCACTGATGGTGTCTCCGCCATCCAGGGTGTAAAGATGCTTGCCCTCGTTCAGGTCCCACAGCATTGCCTGGCCGTCCCTTCCCTCCAGAGGCACACAGGGAGCCATCGGGGGAGACAGTGACGGTGTTCAGGAATCCGGTGTGTCCAATGTGGTTGGTCTTCAGCTTGCAGTTAGCCAGGTTCCACACctattaatataaacacacaccagCTATGTCAAACGATCACAAGCAACTCACTGTCCATACAGACCAAGCTATAGTCAAATGCACCATCCTAATATAAAGTCGCATCCCATCATAATTGCAGGACTTGTCATCAAAACCTCACAGTTCAGACAATCAAATTGTGTCTTGTGTAATCACTGGGACAAAGCATCAACGAATCCCTACTAcctggagagaagagagagatgtGTACCTTAACCATCTTGTCCCAGCCGCAGGACACAATGATGGGGTTGCTGCTGTTGGGAGAGAAGCGCACACAGGAAACCCATTCGGTGTGGCTTTCATCCTGTAACAGAGAGATTTCACCATTTAGAAAAGTCAAGACCTATTTCAAAGCCAGGTAATTAAGACTCACTCCAATGTGTGCATTATCTCCTTTCAGCATTATTATATCAGGTGGATACAACTAAATGGTGCAAAATtgtaagttaaaataaaatgaatcactAACCCAGACTTAAGCCATTTATAGTCATTACACATCCCTTCATAATTGCAGGACTTGTCATCAAAACCTGACAGTTCAGACAACAAAACTGTGGTTTGTTTAATCATTGGGATGAAGACATGCTTAAACTTCTgttacatgcatttaaaaagtcattCAGTTTCAGAGTGGATGGAGCATGAGTGGagttgctttaaaataattgtaaggCAACTAGAACTGGGAATTTCTCCCTTCATACAATATCTGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132295 lncRNA downstream 180512 17564169 ~ 17566963 (-) True G105761
TU132276 lncRNA downstream 185680 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA downstream 185680 17559402 ~ 17561795 (-) False G105752
TU132221 lncRNA downstream 435407 17309790 ~ 17312068 (-) True G105701
TU132092 lncRNA downstream 852401 16893960 ~ 16895074 (-) True G105607
TU132315 lncRNA upstream 3228 17754327 ~ 17755758 (-) True G105774
TU132326 lncRNA upstream 46344 17797443 ~ 17800287 (-) True G105782
TU132331 lncRNA upstream 55580 17806679 ~ 17806929 (-) True G105786
TU132332 lncRNA upstream 246339 17997438 ~ 17997725 (-) True G105787
TU132341 lncRNA upstream 281656 18032755 ~ 18033145 (-) True G105795
AMCG00011303 mRNA downstream 294707 17434502 ~ 17452768 (-) True AMCG00011303
AMCG00011304 mRNA downstream 351488 17379726 ~ 17395987 (-) True AMCG00011304
AMCG00011301 mRNA downstream 404713 17312451 ~ 17342762 (-) True AMCG00011301
AMCG00011299 mRNA downstream 543945 17173697 ~ 17203530 (-) True AMCG00011299
AMCG00011297 mRNA downstream 587889 17148015 ~ 17159586 (-) True AMCG00011297
AMCG00011311 mRNA upstream 10811 17761910 ~ 17773165 (-) True AMCG00011311
AMCG00011315 mRNA upstream 32941 17784040 ~ 17785842 (-) True AMCG00011315
AMCG00011314 mRNA upstream 35821 17786920 ~ 17793506 (-) True AMCG00011314
AMCG00011316 mRNA upstream 429547 18180646 ~ 18190597 (-) False AMCG00011316
AMCG00011318 mRNA upstream 445442 18196541 ~ 18197251 (-) True AMCG00011318
TU132307 other downstream 14407 17729951 ~ 17733068 (-) False AMCG00011313
TU132119 other downstream 786406 16958181 ~ 16961069 (-) False AMCG00011290
TU131862 other downstream 1773603 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 1773603 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 2245342 15499534 ~ 15502133 (-) True AMCG00011251
TU132311 other upstream 154 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 248569 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 433385 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other upstream 433385 18184484 ~ 18191195 (-) False AMCG00011316
TU132457 other upstream 1351194 19102293 ~ 19105269 (-) True G105890

Expression Profile