RNA id: AMCG00011315


Basic Information

Item Value
RNA id AMCG00011315
length 987
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00011315
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17784040 ~ 17785842 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGGACCTaaggcCTACCTCACCTACGCCAGCAGTGTGCAAGTGGGGGCTCAGAGCGGCATAGAGGAGTGCAAGCACCAGTTTGCGTGGGACCGGTGGAACTGCCCGGAGAGCGCCTTGCAGCTGTCCACCCACAACGGACTGAGAAGCGctaCCAGAGAAACCTCTTTTGTACATGCGATTAGCTCAGCTGGTGTGATGTACACTCTTACCAAAAACTGCAGTATGGGCGATTTGGATAATTGTGGATGTGACGATTCCAGGAATGGGAAACTTGggggcAGGTCGTGGATGTGGGGAGGATGCAGCGACAACGTGGATTTTGGGGAGCGAGTTTCAAAGCAGTACGTGGATGCGCTGGAGACCGGGCAGGACTCGAGGGCCGCTGTGAACCTGCACAATAACGAGGCTGGCAGACTGGCCGTCAAGGCGACGATGAAACGCATCTGTAGATGTCACGGCATGTCCGAGAGCTGCAGCGTCCAAACCTGCTGGCTCCAGCTGTCCGAGTTCAGAGACATCGGGAACTACCTGAAAGTGAAGCACGACCAAGCCCAGAAACTGGAGATGGACAAGAGGAGGATGCGAGCCGGCAACAGCGCCGACAACCGAGGGGCCATCGCGGAGGCTTTCAGCACCATCGCCCGGACAGAGCTCATCTACCTGGAAGAGTCCCCGGATTACTGCGCCAAGAACGCCAGCATGGGGCTGCACGGCACGGAGGCCAGGGAGTGTCTGCAAAGTGGCAAGAACCTCTCCCAGTGGGAGAAGCGCAGCTGCAGGAGGCTCTGCCATGAGTGCGGCCTGAAAGTGGAAGAGAGGAGGAGTGAAATCGTCAGCAGCTGCAACTGCAAATTCCACTGGTGTTGCACCGTGGAATGCGAGCAGTGCACACAGGTTGTCACCAAACACATTTGTGCCAAGAGAGATGGAGTACTTGGGCATTTTAACAACAGACGAAAACCCCGTGGGCATAAACGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132315 lncRNA downstream 28282 17754327 ~ 17755758 (-) True G105774
TU132306 lncRNA downstream 32941 17745649 ~ 17751099 (-) False AMCG00011313
TU132302 lncRNA downstream 32941 17747475 ~ 17751099 (-) True AMCG00011313
TU132295 lncRNA downstream 217077 17564169 ~ 17566963 (-) True G105761
TU132277 lncRNA downstream 222245 17559402 ~ 17561795 (-) False G105752
TU132326 lncRNA upstream 11601 17797443 ~ 17800287 (-) True G105782
TU132331 lncRNA upstream 20837 17806679 ~ 17806929 (-) True G105786
TU132332 lncRNA upstream 211596 17997438 ~ 17997725 (-) True G105787
TU132341 lncRNA upstream 246913 18032755 ~ 18033145 (-) True G105795
TU132380 lncRNA upstream 389826 18175668 ~ 18247770 (-) True G105823
AMCG00011311 mRNA downstream 10875 17761910 ~ 17773165 (-) True AMCG00011311
AMCG00011313 mRNA downstream 34391 17717626 ~ 17749649 (-) False AMCG00011313
AMCG00011303 mRNA downstream 331272 17434502 ~ 17452768 (-) True AMCG00011303
AMCG00011304 mRNA downstream 388053 17379726 ~ 17395987 (-) True AMCG00011304
AMCG00011301 mRNA downstream 441278 17312451 ~ 17342762 (-) True AMCG00011301
AMCG00011314 mRNA upstream 1078 17786920 ~ 17793506 (-) True AMCG00011314
AMCG00011316 mRNA upstream 394804 18180646 ~ 18190597 (-) False AMCG00011316
AMCG00011318 mRNA upstream 410699 18196541 ~ 18197251 (-) True AMCG00011318
AMCG00011317 mRNA upstream 485570 18271412 ~ 18272204 (-) True AMCG00011317
AMCG00011330 mRNA upstream 1330655 19116497 ~ 19121979 (-) True AMCG00011330
TU132311 other downstream 32538 17751253 ~ 17751502 (-) True G105770
TU132307 other downstream 50972 17729951 ~ 17733068 (-) False AMCG00011313
TU132119 other downstream 822971 16958181 ~ 16961069 (-) False AMCG00011290
TU131862 other downstream 1810168 15963338 ~ 15973872 (-) False AMCG00011259
TU132338 other upstream 213826 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 398642 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other upstream 398642 18184484 ~ 18191195 (-) False AMCG00011316
TU132457 other upstream 1316451 19102293 ~ 19105269 (-) True G105890
TU132572 other upstream 1624526 19410368 ~ 19413015 (-) False G105970

Expression Profile