RNA id: TU132382


Basic Information

Item Value
RNA id TU132382
length 1415
RNA type TUCP
GC content 0.46
exon number 5
gene id AMCG00011316
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 18180646 ~ 18191195 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGTCTAGCCTTATGTCACTGCATGTAATGTCCAGGTGCAGTCCAACTAAgtagttgatttatttttgttttgcaggtaATAACAGCAGAATACTCCATTTAAACCGTTTGCTAGCTACAGTTTCACTGGATCTCACTAACGGCGCCCGGAACGATGTGCTGGATTTGCTTTGGTGATTCACATTGCCCGTAGATGCCAcctatttcaaacaaaaaacacccgAAGTTTATGATTGACAGACAGCAGTGTGCATGAATGACCAAGGACTTGGGGTCTAGATCAGAAAATAAAGACCAAAGATAAACGGATATCTTGTTTTGGGGTTGACGAGGAACTTGAGCCTGGATGTCAATGCCTTTGTTTGAATCTTAACAAAGAAACAGTCTGGGCAGCTCCTACTGTACCACCTCCACCATGTAGATCAGTCTCGTCGCATTGGGACGGATGTAAGTGGTTTATGCTGAAATTGTAGTGACAAACTTGTTACCAGCAAATACATGTCGCTTTTTCTCTTCAGTCTGCGTCTGAAACCCGGAATTTGCACTTCTGCGTGAACCCGTCCCAGCTGTTTGCGGGAGCTGCAGCTCACTGAGCGGCATGGACCTCCTGTCCTGCCCGCTGTGCCAGGCTGTGCTGTTCGAGCCGGTGACCGTGTCCTGCGGCCACTCCTTCTGCAAGAGATGCGTGGGGACGGGTCTGCCTTCCAAGTGCCACATATGCAAAGAGAGGTTAAAACTAAGGGACGTGAAACATGTCAGAAATAACGTTGTGCTGTTTAGTATCATTGAAAAATGCTACCCAGAAGAGACCAAACTGAAGTGCCATTTGCAGGACTTACTTAAAAACTGCGAGTTTACAGCAGCTCTACGGATTGCAGACGAAGGACTGGAACTGGCACCTAATGATGTCAGTCTGCGAATGTCAAGGGCAGAAGCCAACATGGGACTACAGTGCTTTACTGACGTACTGGAAGATCTGGATGTATTATGTAAAACACGGCCCACGTGGACTGAGgGTTACTTTCGAAAAGGGAATGTATTTGTGGAAATGGGACAAAAATCAGAGGCTTTGATTCAGTATCATCACTGTCTCCGACTACAATTGGAATGTGCTCCTGCCAAACAACAGATACAGAAGATACTGAACACAGATGGTGTCCCCATTCCTGAGGATATTGAAGACTTACTCAAAGTCGTCTCAATCCATATGAGAAACTCTAGCCCAGCAACAAGCTCTATGAACACTGTGAGTGAAAGCACTCATCTGGCCCAGCTCCTGGAAGTGGAGAGCAAGCAGAATCCGTGTGAAATAAACCAAGCCAAGAAAGCTGATTGCTGCATCAGTCTGTGTCAGGCGGTCTCTTTTCTACCAGGAAGAGAAGCAGCAGATGATCAAATGATGAAAAACGAGGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132341 lncRNA downstream 151339 18032755 ~ 18033145 (-) True G105795
TU132332 lncRNA downstream 186759 17997438 ~ 17997725 (-) True G105787
TU132331 lncRNA downstream 377555 17806679 ~ 17806929 (-) True G105786
TU132326 lncRNA downstream 384197 17797443 ~ 17800287 (-) True G105782
TU132315 lncRNA downstream 428726 17754327 ~ 17755758 (-) True G105774
TU132399 lncRNA upstream 49481 18240676 ~ 18244145 (-) True G105840
TU132422 lncRNA upstream 425654 18616849 ~ 18617084 (-) True G105859
TU132493 lncRNA upstream 1042527 19233722 ~ 19244483 (-) True G105918
TU132565 lncRNA upstream 1185318 19376513 ~ 19376908 (-) True G105967
TU132567 lncRNA upstream 1205598 19396793 ~ 19469364 (-) True G105968
AMCG00011314 mRNA downstream 390978 17786920 ~ 17793506 (-) True AMCG00011314
AMCG00011315 mRNA downstream 398642 17784040 ~ 17785842 (-) True AMCG00011315
AMCG00011311 mRNA downstream 411319 17761910 ~ 17773165 (-) True AMCG00011311
AMCG00011313 mRNA downstream 434835 17717626 ~ 17749649 (-) False AMCG00011313
AMCG00011303 mRNA downstream 731716 17434502 ~ 17452768 (-) True AMCG00011303
AMCG00011318 mRNA upstream 5346 18196541 ~ 18197251 (-) True AMCG00011318
AMCG00011317 mRNA upstream 80217 18271412 ~ 18272204 (-) True AMCG00011317
AMCG00011330 mRNA upstream 925302 19116497 ~ 19121979 (-) True AMCG00011330
AMCG00011334 mRNA upstream 1009301 19200496 ~ 19208029 (-) True AMCG00011334
AMCG00011333 mRNA upstream 1018627 19209822 ~ 19217839 (-) True AMCG00011333
TU132338 other downstream 184039 17999668 ~ 18000445 (-) True G105793
TU132311 other downstream 432982 17751253 ~ 17751502 (-) True G105770
TU132307 other downstream 451416 17729951 ~ 17733068 (-) False AMCG00011313
TU132119 other downstream 1223415 16958181 ~ 16961069 (-) False AMCG00011290
TU131862 other downstream 2210612 15963338 ~ 15973872 (-) False AMCG00011259
TU132457 other upstream 911098 19102293 ~ 19105269 (-) True G105890
TU132572 other upstream 1219173 19410368 ~ 19413015 (-) False G105970
TU132729 other upstream 1674419 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 4862121 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 6821010 25012205 ~ 25018332 (-) True AMCG00011445

Expression Profile