RNA id: AMCG00011322


Basic Information

Item Value
RNA id AMCG00011322
length 2388
RNA type mRNA
GC content 0.39
exon number 5
gene id AMCG00011322
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 18245569 ~ 18252371 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTTTACTGGACTGGAGTGAACTGACCAGCCCGTGTGGCCAGAAGGCTGCGGTGTCATCAGCCTGTGACAGGGATGGGCGGCGCGGCTCTCAGGTGCGTTGTCGTCCTTCAGAGCAGGTGATGCGGGTGGAGCTGCCGGAGCAACGCGGCGGATCACTCATTACTTTGTCCTGCCCATCACAAACTGTCATTTGCAAGGTTTTAAATGAAGTAAATGGGACCGACCCCCTTAATATCAACAATGCAACTGTGAACAACCCCCCAGTAGACAAATGGAGAAACTACAACTTCTGGATCGGCCTTTGTCTAGCTATCTTCTCTGCTGGCCTTATTGGGGGCAGTGTCATTCTGAAAAAGTGGGCTCTCTTAAGACTGGCTCGCAAGGGGGAAACCAGAGCAGTGGGTGGTGGTGAAGCTGCAAACTTTGCTGCATATGCTTTTGCTCCAGCTACAGTAGTAACTCCATTGGGTGCCTTAAGTGTACTTATAAGTGCAGTATTGTCCTCCTACCTACTTGGAGAGAGCCTGAATTTGCTGGGGAAACTGGGATGTGTTCTAAGTCTGCTGGGAAGCACTGTAATGGTCATCCATGCtccagaggaggaggaagttAGAACACTTGAAGAAATGACTGCCAAACTTTTGGATCCTGgctttattgtttttgctattgttttattcattttatgtatgGTGCTGATCTTCTACTTTTCACCACGGATTGGACAAACCAACATCTTGATCTACATTAGCATCTGTTCTCTGCTTGGGGCCTTCACGGTTTCTTCAGTCAAAGGCTTGGGCATTGCCATAAAGACGTTTGTTAATGATCCTTTTGTAATAAAGCATCCCCTTACATGGATTATGATTTTCACATTGGTGACTTCCGTTATCATCCAGGTGAACTATCTCAACAAGTCACTGGATGTCTTCAACACCCTGCTGGTTTATCCCATTTACTATGTGCTCTTCACCACTGTTGTCCTGACCACATCCATCATTCTCTTCAAGGAGTGGTACTCTATGTCAGGAGTGGACATTGTTGGAACTCTCTGTGGGTTTGCCGTGATCATCTTCGGAGTTTTCATGCTGCATGTTTTCAAGGACCTAAAAGTCAGTCTGGAAAACCTTCCACAACCAGTCCATCAAAGCCAGGAAGAACCTGTGCCTCAGTTGGTCAAAGCTGATGACAAACGGATTCTCATTGACAACATTGAATGCTTACCTCCTTTCATGGAAGAGTCACCAAGGGTATTTATAATAAGCTGAATTAAGTGGTTTTgtcataatgtatatatttttaaataattttaatgtttggcTGCTGATGACCCCTTGGTGAAGTGGCAGGTACAGTGAACAGtattttgttgatgttgaaATACTCTGAAACTCCAAACAATATGAACAGATCTgtggttttatatattaattttaaaatgtcctggTCCTTAGATTTTAACGTTGGAGCATCTCCTTTTTGTTTCCACCACATGCTTATCAGATTATCGTGATTTGTTTCAAGAACACACAGGTCTGGGATGATTTGGATTTTTAGAATGACTTTCTATGAACATTTCCAAGTGAAAATTCATGCTTGTGTATTGCAAAGCTTCTTTCCAATCTTGTAATTTTAAAGAAGCACAGCTGTAATGTTTATGATGGTCATGGTAGTCCACATTGAAATCTGTATATttgaagttatttattattgtttatccAATTCAAGTAATGAAATGCCTTTCAGTGAAATCTACTACCATATGAATACATGCAGTGGAAAAACTCAGTTATTGATTTcactgatttttaaataatgaattcagTTTCAGACTAAATGTTTCTGAACAAAATGGAACAACTTTGCAAAGGTTTGCGGTTTTGTTCCAGACTTTTtggcaatacatttttcttggtTTACATTCCTAACAGATTGTTGGGGAGagtcttttcttttcagctttTCAAGATTGAATGGTTACAAAAGTATcagcatttgtgtatttaaccaaacataattgttttcagCATATTTGAGAAGAATGAGCtatacatttgaaaggaaatgttttacaaattaacttttaaaaatctatttttaactGTACTTTAATGGACTGATACTGTGAGTGTAAATATGCAAGCATTTTcaggtttgttttctgtttattttttgtgtgaaacatatgtatttttcttgaaTGTAAATGATAGAGAACAATCTATGGTCCAATAAAATTTATTACTGTTTCTGAATTGAATGTGTTCCTTCCAACCAAAAACGGTGGTTCTTACAATTGTTATTTTAGTGGAATTATGATAACCTTTCAATTTGGTTGTAAAAATCCACTGGTTGGTTGCTACTGACATGAACTTTTATGCAga

Function

GO: NA

KEGG:

id description
K22733 NIPA, SLC57A2S; magnesium transporter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132340 lncRNA upstream 212544 18032755 ~ 18033025 (+) True G105794
TU132337 lncRNA upstream 245226 17999636 ~ 18000343 (+) True G105792
TU132318 lncRNA upstream 477348 17765891 ~ 17768221 (+) True G105776
TU132310 lncRNA upstream 494085 17751250 ~ 17751484 (+) True G105769
TU132287 lncRNA upstream 503182 17734990 ~ 17742387 (+) True G105756
TU132421 lncRNA downstream 364479 18616850 ~ 18617065 (+) True G105858
TU132641 lncRNA downstream 1335822 19588193 ~ 19588973 (+) True G106022
TU132698 lncRNA downstream 1550800 19803171 ~ 19803475 (+) True G106071
TU132775 lncRNA downstream 1704634 19957005 ~ 19995987 (+) True G106134
TU132783 lncRNA downstream 1725876 19978247 ~ 20014348 (+) True G106138
AMCG00011321 mRNA upstream 1424 18220046 ~ 18244145 (+) True AMCG00011321
AMCG00011323 mRNA upstream 33706 18200641 ~ 18211863 (+) True AMCG00011323
AMCG00011320 mRNA upstream 147496 18092116 ~ 18098073 (+) True AMCG00011320
AMCG00011324 mRNA upstream 169532 18070401 ~ 18076037 (+) True AMCG00011324
AMCG00011305 mRNA upstream 483786 17757826 ~ 17761783 (+) True AMCG00011305
AMCG00011319 mRNA downstream 7429 18259800 ~ 18268657 (+) True AMCG00011319
AMCG00011325 mRNA downstream 550267 18802638 ~ 18822410 (+) True AMCG00011325
AMCG00011326 mRNA downstream 694981 18947352 ~ 18999884 (+) True AMCG00011326
AMCG00011327 mRNA downstream 764851 19017222 ~ 19042201 (+) True AMCG00011327
AMCG00011329 mRNA downstream 801763 19054134 ~ 19090434 (+) True AMCG00011329
TU132321 other upstream 457519 17784163 ~ 17788050 (+) True G105778
TU132132 other upstream 1263328 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 2261490 15963340 ~ 15984079 (+) True G105373
TU131793 other upstream 2389785 15853764 ~ 15855784 (+) True AMCG00011252
TU131792 other upstream 2393180 15850646 ~ 15852389 (+) True AMCG00011253
TU132460 other downstream 860539 19112910 ~ 19117369 (+) True AMCG00011328
TU132491 other downstream 969684 19222055 ~ 19222421 (+) True G105916
TU132810 other downstream 1842858 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 1859709 20112080 ~ 20162966 (+) True G106139
TU132801 other downstream 1866204 20118575 ~ 20162966 (+) False G106139

Expression Profile