RNA id: AMCG00011330


Basic Information

Item Value
RNA id AMCG00011330
length 2565
RNA type mRNA
GC content 0.53
exon number 9
gene id AMCG00011330
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19116497 ~ 19121979 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGACATCATAGCGATCAGCTCCGGCAGCGAGGAGGACTCGGACGTGGAGGTGCTCAGTATTTTGAGAGGCTCGGATGACGGTGAGAGGACCCCCGAGCTCCCCGCGGCACGCACTGCTCCGCCTTTGATCGATTTAACAGATTATTCCCATCCGTGGGCTTTTACAAAACGGAAAGGAGGAACTGTGGAACTGGTTGACCTGAGTGAGAGCAGTCCTGAGAAGTCCGATGCAGGACCACAGTGTTTGAAGGTGGAGGAGAGGAACGGGATCCTAGATGAGTTAACGAGCGAGAAGACAATGGAAGACCTCGACATTCCCTCGGTACGATCCCTCAGTGAACTTCTGGAGTCAGACATGTCCTCCCCTACTCTCCCTCAGTACAGCTTCCTGGACGAGTTGCCGTTTGATTTGCCGCACCCGGAGTGGTGTTCTGCTACCAGCATACAGTGGGAGGAGGAAAAGAAGGAGGAGATTGAGCATATAGGTGAGCACACCCCAAACTACTCCGGTGGCTCTGCATCTCTGGGCAGTCGTACCCCATGCTACTCCAGCGATGGAGACATGGCTGTGTTTTCAGATGATATGGAAGAAGGACAAGGGGAGGGCGCCTACCAACATAATGAGCCCTACCATACCAAACAACTATTTAACCCACAACCTGCTTATCACGAACCAGTCCTGGAAACAGTTTCTGCAGAGTCTTATGGAAGCCTGCAAATCGATGAGGGTCAACCTGAGAGGCCCTGCTCCGGAAGCAGTGATAGCATGTGGACATGCTTATATGAGCTCACCGGAAACAAGACGCCTTCTCCAAAGCAAGATGAGTTGCAGGAGAATGTAAAACAGGATTGTCCTGAATCAACCTTCCTCGCCAGTCCTCCTGCTGATGAGCAGAAAGTTGGAGAACCAAGTAGCCCGACCTCCACTGAGATTCTAGCTGGCGATTCCCCTGACTGGCTTCAGGAGGATGTGGACCTGACCTTGGATAGCCCCAGTAGTTTATTCGCCACTGATGGGATAGACCAGGTCTTTGACTCTTGTGGTAGCCATTCAAGTAGGAGTCCTCAGCCGAGCCCACAGCTGGAGGAAAGTAGGAGTGTCGAGCTGTCCGACACTGAGTCAGAACAGGGTGTGAGGGGTGTCAAGCGAAAAGAGCGCTGCTATGTTTCCCGAAGTGGGCTGAAAAAGTTGAAGCTGCTCACAGGATTGCCTGTCCAAGACCTCTATCCTGGGAGAATGGCAGGCGATGTTCAGGGAGAGGAGGAGGATTGTGATCTCAGTCAGTCTGAGGATGAGGAGGACTCTGGCAAGCCAGAGCCGATGTCTCTCCGGAGTCTGCGTCTTGTCCACACCACGATGGAGGAGAACTACCCTGAGGGCACCTTGCAGTTTCTGTTTGACTTCCTTCATCCCCGCTTTTACCCGCCTCGTGATATCGTCTCCCATGTTCTCCGAAACCTCCTGCTGGACTCAGACTGCCAAATCTTGGCGACTGAGGCCTACAACCTAATTATGAAGATCCAGCAGTTACATCCAGCTAAGctgagtacagtacagtgggACTGGGAGCTTCTAACATCTGTAATGGATGAAAAGGAACGTGTGAAAAAGCCAGTTCCCGCTGTTCTATGCATGTTTCTGACCTATGTAGTCCAAACCTTGGAGGATGACTTCCATAGGAGGTTGGCAATGCAGGAACTACACCGCTCCATCGCCAAGGCCACGCTCTCTTGCGATAGGAAGTTTCCACACGTCAGAGATGTGGTGAATTGGCTTATAACCGCTGTCATAAATGCCTCCAACGAGTCGGAGATCAAGGAACCGACCAATGAAGGGGATAAATGGAGGAAACGGGAAAGAGATGACAATCTAAAGATAGCGTTTCTTCTCCAGAAGATGCTGGCCCTGGCCATAGAGGTGGACCGCTCCCCGACCTGCAGCTCCAGTAAAGTCTCCCTTGAAATGTTCCACACACTCATTAGCATTGTTCCCCACCGACGCCACAGATTACTGCTGCTGAAGACCATGGAGAGCAAGTTACTGCAGTGCAAACTGGCTGAGCTGTTGCTGGACCATGCCTgcccacaaaaaacaaagatgccCATGTCCCTGAATCTCCTGCTTCACTTCTTCCAAAACACAACCCTCCCTTCAGATCCTACAGATGGCATTGCAGACCAGTGGCGACGGTGGAATGAACTTCTGCATCTGCTGTTCATGCTGTTCGTCAGCTATGGGGAGGTAACCGCTGGTAAGGAAGCTGACACTCTCTGGAAGGGTTTCTGCCTGGGCGTGTTGTCACTGGACTGCTGTGACCCTGTCGTGTGTCCTGTCCCCCCAGCTCACCTGAGATGCTCCGTCACTGAgcgcaccagcaccagcacacTGCCCATCGTCACAGAGCACGACAAGATCAGCCTGCGTGCCGTGCAGGATGCCACGCGGGGGTTTCACAGCCGAGTGTCCGACGCCCTGGGCGCGCCTATGAATTCACAACTGGAGGAGCGTACAGCTCTCTTCCAGTCTCTCTTAATGGAAGTCGTTTTTAAGGATAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132422 lncRNA downstream 499413 18616849 ~ 18617084 (-) True G105859
TU132380 lncRNA downstream 868727 18175668 ~ 18247770 (-) True G105823
TU132399 lncRNA downstream 872352 18240676 ~ 18244145 (-) True G105840
TU132341 lncRNA downstream 1083352 18032755 ~ 18033145 (-) True G105795
TU132332 lncRNA downstream 1118772 17997438 ~ 17997725 (-) True G105787
TU132493 lncRNA upstream 111743 19233722 ~ 19244483 (-) True G105918
TU132565 lncRNA upstream 254534 19376513 ~ 19376908 (-) True G105967
TU132567 lncRNA upstream 274814 19396793 ~ 19469364 (-) True G105968
TU132579 lncRNA upstream 288389 19410368 ~ 19413015 (-) False G105970
TU132578 lncRNA upstream 288620 19410599 ~ 19413015 (-) True G105970
AMCG00011317 mRNA downstream 844293 18271412 ~ 18272204 (-) True AMCG00011317
AMCG00011318 mRNA downstream 919246 18196541 ~ 18197251 (-) True AMCG00011318
AMCG00011316 mRNA downstream 925900 18180646 ~ 18190597 (-) False AMCG00011316
AMCG00011314 mRNA downstream 1322991 17786920 ~ 17793506 (-) True AMCG00011314
AMCG00011315 mRNA downstream 1330655 17784040 ~ 17785842 (-) True AMCG00011315
AMCG00011334 mRNA upstream 78517 19200496 ~ 19208029 (-) True AMCG00011334
AMCG00011333 mRNA upstream 87843 19209822 ~ 19217839 (-) True AMCG00011333
AMCG00011332 mRNA upstream 125645 19247624 ~ 19261952 (-) True AMCG00011332
AMCG00011336 mRNA upstream 174105 19296084 ~ 19307708 (-) True AMCG00011336
AMCG00011335 mRNA upstream 191848 19313827 ~ 19322039 (-) True AMCG00011335
TU132457 other downstream 11228 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 925302 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 925302 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1116052 17999668 ~ 18000445 (-) True G105793
TU132311 other downstream 1364995 17751253 ~ 17751502 (-) True G105770
TU132572 other upstream 288389 19410368 ~ 19413015 (-) False G105970
TU132729 other upstream 743635 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3931337 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5890226 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 7384964 26506943 ~ 26516507 (-) True AMCG00011485

Expression Profile