RNA id: AMCG00011333


Basic Information

Item Value
RNA id AMCG00011333
length 2929
RNA type mRNA
GC content 0.44
exon number 12
gene id AMCG00011333
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19209822 ~ 19217839 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggcctcctctcctttagGAACATCCCATTCACAACCGGACACCCTGGCCTTTCGTAAAGATCATTGCACCAAACCCTTCCATCTCCCAGGGATTGATAACATTGATCAAGACTATCTCTGCACGGGGTCCACTGTGGATCTGGTCAGCAACTCTGACTGTTATGAAGTGGAACCTCACTCTGCCAAACCATGGGAAACCCAGCGGCTGCCCAGGGTTCAAGagCCAAAACAGGAGGAGACTGGTGGAGTGAAGTCTCAGTTCATATCTGTCATGAAGATCCCACTGCTGTTCCTGTTTCTCTACATGTTCGTCTGCTCTCTGGATGTTCTGAGCTCAGCCTTCCAGCTGGCAGGGGGTAAAGTGGCAGGAGAGATCTTCAAGGACAATGTCATTCTGTCTAACCCAGTGGCAGGGTTGGTGGTGGGCATTCTTGTGACAGTACTTGTTCAGAGCTCCAGTACTTCCACCTCTATCATTGTCAGCATGGTGTCGTCTGGTTTGTTGGAAGTGAGGTCCACCATTCCTATTATCATGGGGTCAAATATCGGGACTTCAGTCACTAACACTATTGTTGCATTAATGCAGGCCGGGGAGAGGAATGAATTCAAGCGGGCCTTTGCTGGTGCCACAGTTCACGACTGCTTTAACTGGCTGTCTGTTCTGGTGCTGCTGCCCCTGGAGATGGCCAGTGGCCTTCTGAACCGCCTCAGCAAGCTCGATAAATCTGTGATCACAGGCATCGCAATGGGAGATGACAGCCTCCGAAACAAGAGTCTGGTGAAGCTGTGGTGCAAGTCAAGTCTCTCCATGTCCTCTGTGAATAAGTCTGTGAACAGTCTCCTCAACTGCACTTCCACAAATTGCTGGCAGGAAGGAAACATGACCTGGACCACTGTGAACCAGACGATAGAGGTCCATACACATAAATGTAATCACCTCTTCGTCAACTCCTCAATGCCAGACCTGGTGGTTGGGCTCATCTTACTGGCAGCCTCTCTGGTGGTCCTGTGTACGTGTCTGGTGCTGGTTGTCAAATTACTCAACTCTGTCCTGAAGGGCCAAGTAGCTAAAGTTATTCAGAAGATAATTAACACTGATTTCCCTTATCCATTTGGGTGGCTGACGGGATACCTGGCAATGGTTGTCGGGGCTGGGATGACCTTCGTGGTTCAGAGCAGTTCTGTATTCACCTCTGCAATTACCCCCTTGATTGGTATTGGAGTAATCAGCATTGAACGTGCCTATCCTCTCACGCTGGGATCCAACATTGGCACAACGACGACTGCAATTCTTGCAGCCCTGGCCAGCCCAGGAGACAAGCTAGCAGCTGCATTTCAGATTGCTCTCTGCCACTTCTTCTTCAACATCCTTGGTATAATACTGTGGTATCCCATCCCCTTCATGCGCCTACCTATCCGAATGGCCAAGACTCTGGGGGAGCGCACGGCCAAGTACCGCTGGTTCGCGGTTCTCTACCTCATCATTTGCTTCCTCCTCCTGCCCTCCCTGGTCTTTGGGCTCTCCATGGCTGGCTGGCAGGTGATGGTGGGAGTGGGAGCCCCCTTTGTTGGGATCTTGCTCTTCATCTGCGTCATCAACTTTCTTCAGTCCAGGAGTCCCAGCCGTTTGCCCAAGAAGCTCCAGAGTTGGGACTTTCTTCCAGGCTGGATGCACTCCTTGAAGCCCATGGATGCCCTCATCACAAATGCCACACTCTGCTGTACGGACCACTGCAGCCGCTCCCAGACCAGTGATGCTCAGGATCTGCCCCCTTTCCCAGACACAGCAGCTCAGAAGAAAGCGAAGATGGCCTATGAGAATCCCGCCATCTCATATGTGGATGAAACCACATTTGGCACACCTGTAATAAAACTGCGTGGCCTGGAAAGATCTAGCAGCACACCATTGTagtatttgagaaaaaaaaaaaactgcagaaacgGAAGAAATTGAAATTTTGTTCCAAAAAGGGAAAATCGAGGTTTGGAAGACTTTCTAGTCATGTGAatcttctttatatatatacaaaaaatgacatttttcacataCCTAAGAATGACTTTATACAGGTCTTGGTGAGGCTTGTAATGGTCTTTTGGacttaaatctgaaaaaaaaagtcagttgaCTGAATGAAGCTAAGCCCTGAAAGACCTTTTTGCTttcatatatagagagatatcTTTTTATGTACTCCTATTCTGTGAGCCTTCACAAGCCTTTCTTCCTTTAGGGGATtgcatgtataatatataactgATGTATAACTACAATGATAAATAACACCCTTAATGTGACCGAAGAGGCAGTTAAAATTCAGTCAAAAAACATGACCTGTGTCTTTTTGATGGAAAATTTCAGGGCACAACCCAAGTCCGAAGCAGCCATGTAATTAACAGTTGGGTCAGAGCCAATTCAACTTtagttaatatgtattttatggatTATCCAAAAGCTTCAAAGTACAACAAACGTACAATGCCTGACCTGCTTTTAAGAATAaggatttaaaaacatatatttctcCAAATAGGAAAGCACATTAAGTCGGTCAGTTAGAAAGGAGAATTCCATatcattttttaacttttgagATTGTTTTTCTATCACAGATAACTATAACAAGCTTCTTGATCTAAATGTCTTTTCAGTTACATGTTGGCTTTAATATGCATAATAACTATGAAAGACATCtgaaattgaagaaaaatacaactggagaaaaatatatctttgtCTCTTAACATTGTAGACTTTAAAGGAATGGTGCTATATTTAACAGTATAATAGACCCTTTATttctatgattttattttgaattgcataTAATCTTTCATTCTATAAAGaaatttcaatacatattttgaaactgCTTTAATTTCTACTACAAACTGTAACCAGCAATAAAGACTGCTTTTATGTTAAC

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006817 phosphate ion transport biological_process

KEGG:

id description
K14683 SLC34A, NPT, nptA; solute carrier family 34 (sodium-dependent phosphate cotransporter)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132422 lncRNA downstream 592738 18616849 ~ 18617084 (-) True G105859
TU132380 lncRNA downstream 962052 18175668 ~ 18247770 (-) True G105823
TU132399 lncRNA downstream 965677 18240676 ~ 18244145 (-) True G105840
TU132341 lncRNA downstream 1176677 18032755 ~ 18033145 (-) True G105795
TU132332 lncRNA downstream 1212097 17997438 ~ 17997725 (-) True G105787
TU132493 lncRNA upstream 15883 19233722 ~ 19244483 (-) True G105918
TU132565 lncRNA upstream 158674 19376513 ~ 19376908 (-) True G105967
TU132567 lncRNA upstream 178954 19396793 ~ 19469364 (-) True G105968
TU132579 lncRNA upstream 192529 19410368 ~ 19413015 (-) False G105970
TU132578 lncRNA upstream 192760 19410599 ~ 19413015 (-) True G105970
AMCG00011334 mRNA downstream 1793 19200496 ~ 19208029 (-) True AMCG00011334
AMCG00011330 mRNA downstream 87843 19116497 ~ 19121979 (-) True AMCG00011330
AMCG00011317 mRNA downstream 937618 18271412 ~ 18272204 (-) True AMCG00011317
AMCG00011318 mRNA downstream 1012571 18196541 ~ 18197251 (-) True AMCG00011318
AMCG00011316 mRNA downstream 1019225 18180646 ~ 18190597 (-) False AMCG00011316
AMCG00011332 mRNA upstream 29785 19247624 ~ 19261952 (-) True AMCG00011332
AMCG00011336 mRNA upstream 78245 19296084 ~ 19307708 (-) True AMCG00011336
AMCG00011335 mRNA upstream 95988 19313827 ~ 19322039 (-) True AMCG00011335
AMCG00011345 mRNA upstream 220384 19438223 ~ 19444151 (-) True AMCG00011345
AMCG00011349 mRNA upstream 281521 19499360 ~ 19513320 (-) True AMCG00011349
TU132457 other downstream 104553 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1018627 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1018627 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1209377 17999668 ~ 18000445 (-) True G105793
TU132311 other downstream 1458320 17751253 ~ 17751502 (-) True G105770
TU132572 other upstream 192529 19410368 ~ 19413015 (-) False G105970
TU132729 other upstream 647775 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3835477 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5794366 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 7289104 26506943 ~ 26516507 (-) True AMCG00011485

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038856 True 1607 mRNA 0.49 11 NC_007132.7 33006949 ~ 33032716 (-)