RNA id: AMCG00011334


Basic Information

Item Value
RNA id AMCG00011334
length 1281
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00011334
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19200496 ~ 19208029 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCGATCTAAGACTGTGTCCCTTCGGACTATATGCCAAGAGACACTGACTCACACTTCAGCCCACGGTGTCTCCAGTATTTTGCGCTCCACATCCAAGCCTCAGAAGAACTGCTGGATTGtctttgtggtggtggtggtgatttGCATGTTGTGGCAATGCAGTGAGCTCATCAGCACCTTCTTTCACTACCCTTCCCAGGAGAAAGTCACTCTGGTCAACAGCGCGCGGCTGAAGTTTCCAGCTGTGACCTTCTGCAATCTCAACCGTGTCCGCAAGTCCTTCATGCAGTCCAAACTGCGCTTCCTGAAGGAGGAACTGCAGTTTCTCAACGATGACTATGATGGTGCCAACTTGACCCAAAGCCAGGAGGCTTACATACAGGACAGCAACCGTCTGGGTTTCGCATTGTCTAGGCTCAACCTTGAGGAGCAAGCGGAAGCAGGGCATCAACTGGGGGACATGCTCATCTCCTGTCACTTCCACGGGGAGAAATGTGACAAGAGCTTCTTCAATGCTTTCTTGAACCACAAGTTTGGAAACTGTTACACATTCAATAGCCTAACGAAAATGGAGAAGCGTGGAAGACTGATGAGGAGGGATGTTCTGAATGCTACAAAAGCTGGATTTAGCTATGGTCTCACCATGGAGTTGTCTATTGAACAGGATGAATACATAGAGCACATCAGCCAGGCAGCAGGCATCCGTCTCATCATCCACGATCAGAAGGACATGCCGTTCCCTGAAGATGATGGGGTTAACATTTCTCCAGGCCAGGAATCGGATCTTGCCATTATCAAGGCCTGCAAGAAGACATGTGGACAGATGTATATCATTAAGAACTGTGGCTGTGGGATGTGGGAATTCCCTGTTCCAAAGGGCATCAATGTCCCTTTCTGCAACATtactaacaaatacataaGTCTGCCTTTCCTGCTGCAGGATGAATTTGCCAGAAAGCTGAGGAGATCAGGTGGAAAGCTGGCTAAAGTAGCTGACAAAATACGAGATAATCTTATTAAAGTTGTTATTAACTACCAGCAACTCAACTATGAGCTTATTGAAGAGATTCCATCTTTTCAGGTGATTGATCTTCTGTCCAGTGTTGGGGGGCTTGTAGGGCTGTGGATCGGAGTTTCAATCTGCACTGTGGCCGAGTTTCTGGAGCTCTTcttaaaagttattattttttctattacgAAGGTTGTCAGAAAAAGTCAGCATACACCCCTGAATCCCTACATGATCGCTCACCAGACCTATAAGTCAAATGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132422 lncRNA downstream 583412 18616849 ~ 18617084 (-) True G105859
TU132380 lncRNA downstream 952726 18175668 ~ 18247770 (-) True G105823
TU132399 lncRNA downstream 956351 18240676 ~ 18244145 (-) True G105840
TU132341 lncRNA downstream 1167351 18032755 ~ 18033145 (-) True G105795
TU132332 lncRNA downstream 1202771 17997438 ~ 17997725 (-) True G105787
TU132493 lncRNA upstream 25693 19233722 ~ 19244483 (-) True G105918
TU132565 lncRNA upstream 168484 19376513 ~ 19376908 (-) True G105967
TU132567 lncRNA upstream 188764 19396793 ~ 19469364 (-) True G105968
TU132579 lncRNA upstream 202339 19410368 ~ 19413015 (-) False G105970
TU132578 lncRNA upstream 202570 19410599 ~ 19413015 (-) True G105970
AMCG00011330 mRNA downstream 78517 19116497 ~ 19121979 (-) True AMCG00011330
AMCG00011317 mRNA downstream 928292 18271412 ~ 18272204 (-) True AMCG00011317
AMCG00011318 mRNA downstream 1003245 18196541 ~ 18197251 (-) True AMCG00011318
AMCG00011316 mRNA downstream 1009899 18180646 ~ 18190597 (-) False AMCG00011316
AMCG00011314 mRNA downstream 1406990 17786920 ~ 17793506 (-) True AMCG00011314
AMCG00011333 mRNA upstream 1793 19209822 ~ 19217839 (-) True AMCG00011333
AMCG00011332 mRNA upstream 39595 19247624 ~ 19261952 (-) True AMCG00011332
AMCG00011336 mRNA upstream 88055 19296084 ~ 19307708 (-) True AMCG00011336
AMCG00011335 mRNA upstream 105798 19313827 ~ 19322039 (-) True AMCG00011335
AMCG00011345 mRNA upstream 230194 19438223 ~ 19444151 (-) True AMCG00011345
TU132457 other downstream 95227 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1009301 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1009301 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1200051 17999668 ~ 18000445 (-) True G105793
TU132311 other downstream 1448994 17751253 ~ 17751502 (-) True G105770
TU132572 other upstream 202339 19410368 ~ 19413015 (-) False G105970
TU132729 other upstream 657585 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3845287 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5804176 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 7298914 26506943 ~ 26516507 (-) True AMCG00011485

Expression Profile