RNA id: AMCG00011335


Basic Information

Item Value
RNA id AMCG00011335
length 2409
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00011335
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19313827 ~ 19322039 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCGCGGTGGCTTCTGGGACACAGCAGGCTAGTTGGTTCTTTTCCGGTGCATGCTGGGACCTCAGTTTTCAAGATGGCGACGTCTCTGGGAGCTAATACTTACAATAGACAGAACTGGGAAGACGCgGATTTTCCCATTCTCTGTCAGACATGCCTGGGAGAAAATCCATACATTCGCATGaCCAAGGAGAAGTATGGCAAAGAATGCAAGATCTGTGCCAGGCCCTTTACAGTCTTCCGCTGGTGCCCAGGTGTGAGAATGCGCTTCAAGAAAACGGAAGTGTGTCAGACGTGTAGCAAGCTGAAAAATGTGTGCCAGACCTGTCTCTTGGATCTGGAGTATGGTTTGCCAATCCAGGTTCGTGACACTGGATTGTCAATCAAAGATGAAATGCCGAAATCCGATGTGAACAAAGAGTATTACACTCAGAACATGGAAAGAGAGATCCAGAGCACTGATGGGACAAGGGCAGTTGGACTGTTAGGCAAGGCTCCAAGCTCCAGTGATATGCTGCTGAAACTGGCCAGGACCACCCCTTACTACAAGCGTAACCGCCCTCACATCTGTTCCTTCTGGGTGAAGGGAGAGTGTAAGAGAGGAGAAGAATGTCCCTACAGGCACGAAAAACCGACAGACCCAGATGATCCCCTGGCTGACCAGAACATCAAGGATCGTTACTATGGGATAAACGATCCAGTGGCAGATAAGCTTTTGAAACGGGCCTCTACCATGCCCCGTCTCGACCCCCCTGAGGACAAGACTATCACCACACTGTATGTGGGGGGACTGGGAGATACGATCACAGAAACCGACCTCAGGCAGTCGGCTGAGCTGGCTGCTGAGAAATCCTTCAACAAGCTCATCATCAACGGCCGCAGACTCACAGTGAAGTGGGGCAGGTCTCAGGCGGCCCgagggaaggagaaggagaaggatgGAGTGAGTGAGACTGGGATGAAGCTCGAGCCGGTACCCGGCCTCCCAGGagTGCTGCCTCCTCCGCCTGTGTCAGAGGAAGAAGCCCCTGCCAATTACTTCAACCTGGCTCCCAGCACGTCCCCTGCAGTCATGAACATTGCCCTGCCTCCCCCGCCCGGCATCGCACCCCCGCCTCCCCCCGGTTTTGGACCTCCTATGTTCCACTCCATGGGCTCAATGGGtcctccccccccacctccgATGTCAATGAGGGCACCTGGTCACATCCACTACCCTTCCCAGGATCCCCAGCGCATGGGTGCCCATGCTAACTGCCATGGTGGTTCCTAATTGCtctgttctgtttgtgttttttgtgtctgtCTAGCTGACGGGCAACTCTATGTACCTTATGCAGCACAATTACTGATTTGTGGTAATTATTCAGATCCCCGTTTTAACAGTTtgtcaaataaatcaataatttgaCTTCAGCTCTTCGGCCGTAACATGAACCTTGTTTTAATGTGGTCATGGTAATGGACATCTAAGACTTATGTATTTGGTGCATGAAAATTCATGGCAAAATGACTGGATTCTAGATGCACATCTGTGTTCTACATTCCCTGTAGTTTTCCTGTAATACCACTTCCTTGTGGTGTTATGTACCGattgacacattttaatttgagcaGAAGACCATATCAGAATGTCACAGCTTTGGACCATGCTGAAATTGACACTTACTTTTTAAGTAATATAGATCccttatttaaaaccaaaaataaaacctaaaacacTTACTGTTATCCATGTTTCTGTAGTTCAAGTGAAATGGTTTGTATAATGATTGAAGTCCATGGGGAGAAGATTGTATGTTTCCCTTGGGCTGAAGTAATGGTGACACTTAATCAGTAAActgaaaacagtattttaatgtaaaccaTTGCTAAAGAGATGTCTAATTTTAAGTCGGGTATTAAACCAAGGTTAGACTAGAGATCTTGTTGTAAGGGCCTGATGTAAGTAACACAAAAGGCCCTAAGCCATTGCTCTGTACTGAAGAGCACAATTTGTGTTTATCTTGTGTCAGATCCATTTTTAATGTCTTATTGGCTGCTTAGGTTTGGGAAAATCAGACCAATACGTCACTGTGTAATGAGATATTGACCTTAATTATTGGCAATATTGTCCTCATCAggttagtttttattttcagcctTTAGTGTCTAAAAGGAAAACACCTCTATAcctatatttacaatatatttagatGGTTCAGGATCAATGTGATCTGAAGGTATTTTTTTACAGACCTAATGCAGTGTATATTTCTATgacttgttctttttttttttttttttttatcaaccaGCTATGGATACAAACAAGATActttatgcttttttatttttttttgttacattgtacAACTGGCAATTTCATGTAGTTTCTTCACttataacattaaaattagTTCCCATCTTCC

Function

GO:

id name namespace
GO:0033120 positive regulation of RNA splicing biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0009790 embryo development biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017069 snRNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
K12872 RBM22, SLT11; pre-mRNA-splicing factor RBM22/SLT11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132493 lncRNA downstream 69344 19233722 ~ 19244483 (-) True G105918
TU132422 lncRNA downstream 696743 18616849 ~ 18617084 (-) True G105859
TU132380 lncRNA downstream 1066057 18175668 ~ 18247770 (-) True G105823
TU132399 lncRNA downstream 1069682 18240676 ~ 18244145 (-) True G105840
TU132341 lncRNA downstream 1280682 18032755 ~ 18033145 (-) True G105795
TU132565 lncRNA upstream 54474 19376513 ~ 19376908 (-) True G105967
TU132567 lncRNA upstream 74754 19396793 ~ 19469364 (-) True G105968
TU132579 lncRNA upstream 88329 19410368 ~ 19413015 (-) False G105970
TU132578 lncRNA upstream 88560 19410599 ~ 19413015 (-) True G105970
TU132566 lncRNA upstream 100396 19422435 ~ 19427947 (-) False G105968
AMCG00011336 mRNA downstream 6119 19296084 ~ 19307708 (-) True AMCG00011336
AMCG00011332 mRNA downstream 51875 19247624 ~ 19261952 (-) True AMCG00011332
AMCG00011333 mRNA downstream 95988 19209822 ~ 19217839 (-) True AMCG00011333
AMCG00011334 mRNA downstream 105798 19200496 ~ 19208029 (-) True AMCG00011334
AMCG00011330 mRNA downstream 191848 19116497 ~ 19121979 (-) True AMCG00011330
AMCG00011345 mRNA upstream 116184 19438223 ~ 19444151 (-) True AMCG00011345
AMCG00011349 mRNA upstream 177321 19499360 ~ 19513320 (-) True AMCG00011349
AMCG00011348 mRNA upstream 195392 19517431 ~ 19539640 (-) True AMCG00011348
AMCG00011350 mRNA upstream 228188 19550227 ~ 19570328 (-) True AMCG00011350
AMCG00011355 mRNA upstream 399115 19721154 ~ 19726365 (-) True AMCG00011355
TU132457 other downstream 208558 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1122632 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1122632 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1313382 17999668 ~ 18000445 (-) True G105793
TU132311 other downstream 1562325 17751253 ~ 17751502 (-) True G105770
TU132572 other upstream 88329 19410368 ~ 19413015 (-) False G105970
TU132729 other upstream 543575 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3731277 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5690166 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 7184904 26506943 ~ 26516507 (-) True AMCG00011485

Expression Profile