RNA id: AMCG00011341


Basic Information

Item Value
RNA id AMCG00011341
length 2335
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00011341
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19422459 ~ 19427557 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAGGACTGGTTTCAGTTCTGCTCACCCCTCCTATACAGCGGACTGAGAAAGGGCAGGCTCTTCCTTATTTCTTGAAGTTTTTAAACTGTGCGCAGCCTGATCAGCATCTTTATCATCCGAGAAGCACCTGCTGAGGACGTGCCAGTGCGGACAGTTGCAAGGATGGCTGAGGGTTCAAGCGAGTCTCTTTTGAGGAATGAAGTCCCCCCCAGTGATGAGACTGTTGTGTCAATGCAAAACGGACAGACGGGaGCCTTGTCCAACCGTGGGTACAAAATCGCTGGCTTTACCCTGCTGGCATGCGTGCTGATTGCAGGCCAAGCCATCACTGCATACTTTGTGCTTTCTCAGAAGGATCAGATCTCAAATCTGGAGCAGCACACCCAGAGTCTGAAGCAGCAGCTGAACACTCGCAAACAATCATCACCATCTGTCCCCAAGATGCTGCATATGCCAATGTTCAAAATGCCCCTGCTCCTAGATGACACAGAGAAGCCAAAGAAGACCCCCATGAAGAAACTGGAAAATACTGCCACTGTCAGCCTGGAGAAGCAAGTCAAGGACCTTCTGCAGGACCAGAACCTTCCTGAGTTCAATGAGACTTTCCAGGGGAACCTGAAGAGCATGAAGGATCAAATGGAGGAGTCCGAGtggaagGACTTTGAGTCCTGGATGCACAAATGGCTGGTCTTCCAGATGGCCCAGCAGAAACCACCTCAGCCAACCCCTCTTCCTGTGGAGCAGACTACTCCTATTGAAGAGTCCGGAATTCAAACCAAATGCCAGGTGGAGGCCAATTCCAAGACAGTGCATCCTGGGGTTTTCCGCCCCAAATGTGATGAGCAGGGTAACTATGAGCCATTGCAGTGCTGGGACAGCACCGGCTTCTGCTGGTGTGTCGACAAGGACGGAAAGGAGGTGCCCGGTACTGCAACCCGCAGTGAGAGACCTCAGTGTGATGGTGGTGCAGGACCTGCACGTATGATGGCCATGCCAAGCATTCCCAGAATGCTGGAGATGAAAGatGAGTAAAATAACTGGGAGGAATGCACGTCAAAGACAGCTATGAAGCGCTCTACAAATTTGATATACTGATGTATTAATGGATATATTAATGAATGCTTATTTGAAACTAACCGCTTTTGGCAAGCAGATAAATACTTTAAGGAAAAtgggatttagtttttttctgaggGACTAAAgtaactttgttttaaaatctttacCTAATAATTGTATTGACTGTAACAGTGAACCATGTTGGACTGACCTGTTACATTTTGTGATTGTGGTGAAGTCTTTTGTGTTGAATGATCCCTTGCACTTAGTTATACATGCCATTTCAAGGCATCTTAATTACAAACGGGCACAAAATAATTAGATCACCATCCACAAAAAGTACTTTGCATTAAAACCACAATTGGTAGCTGTAGAAATCTGCCACACACTGAACTCCACATCTCCACAAACATGCATGGAAACACCAACCCTAAATTCAAGTCTTCactgcagttattattatttttttaatttaaaatcttcaactgaatgatttgtttattagatttaagaaaatattctCTTTCTTTTACCTAACGTGCTTACAAGTTAAGATGTATTGAAGTTTTAAGAGGGCTAAatgatgtaaatgtatgtgaagtgagaaaataaaagatggTATTTCTAACCAGCTGCTTTTGACGGAGTTATGTGTTCAGTAtggcatattttaattttaatagttCCTTTCCAAAACAATTTGAACAGCCACTGGTacaaaacaatcacaaacaTTAGGCCCTAATACATACAAAGTTGAATCTTGGGAGATGATCATACCAACTGaatatttaaagtttattactatttatcaattatacaatcccttttagtttcttttgtatcattgtgtgcatttTATGGAACCGTTAAGTTAAATGTTGCTGCATTACACCTAGGGTCAAGTGTAACTAATCTCCAACAAAGGTTAACTTGTACCATTCAGTAATTATCCTTTGTACACCAACATGTGACATGAGTTATCTTGGAGtgatatataatatgtaatggCTGCTAAAAAAATGGTGAATAGGGTGGAATATAATTGAAAACCCTTAATAATTTGTCTGGGTTAAAATGATTAACAttaactgactgacactgaaCTAATACTGAGATTAACCTTAAAACTGACTTTGCGTTTTCATTGAGTTAAGTTGTTTCTCTATGCCCTCTTTGTTGCTTCTGGGCAATTCTAGAAGGCAGACAGGCAGCATGTGGAAAGTCCTGGACATGCCACACAATTcagcatacaaaaacaaaaacgattCTGTA

Function

GO: NA

KEGG:

id description
K06505 CD74, DHLAG; CD74 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132421 lncRNA upstream 805394 18616850 ~ 18617065 (+) True G105858
TU132361 lncRNA upstream 1174691 18175355 ~ 18247768 (+) True G105811
TU132340 lncRNA upstream 1389434 18032755 ~ 18033025 (+) True G105794
TU132337 lncRNA upstream 1422116 17999636 ~ 18000343 (+) True G105792
TU132318 lncRNA upstream 1654238 17765891 ~ 17768221 (+) True G105776
TU132641 lncRNA downstream 160636 19588193 ~ 19588973 (+) True G106022
TU132698 lncRNA downstream 375614 19803171 ~ 19803475 (+) True G106071
TU132775 lncRNA downstream 529448 19957005 ~ 19995987 (+) True G106134
TU132783 lncRNA downstream 550690 19978247 ~ 20014348 (+) True G106138
TU132777 lncRNA downstream 559647 19987204 ~ 19995987 (+) False G106134
AMCG00011337 mRNA upstream 8178 19410611 ~ 19414281 (+) True AMCG00011337
AMCG00011340 mRNA upstream 25695 19372447 ~ 19396764 (+) True AMCG00011340
AMCG00011338 mRNA upstream 109094 19311307 ~ 19313365 (+) True AMCG00011338
AMCG00011344 mRNA upstream 133264 19286626 ~ 19289195 (+) True AMCG00011344
AMCG00011343 mRNA upstream 143203 19268970 ~ 19279256 (+) True AMCG00011343
AMCG00011342 mRNA downstream 6771 19434328 ~ 19438204 (+) True AMCG00011342
AMCG00011339 mRNA downstream 23458 19451015 ~ 19475876 (+) True AMCG00011339
AMCG00011346 mRNA downstream 53181 19480738 ~ 19484146 (+) True AMCG00011346
AMCG00011347 mRNA downstream 58102 19485659 ~ 19499205 (+) True AMCG00011347
AMCG00011351 mRNA downstream 173808 19601365 ~ 19609025 (+) True AMCG00011351
TU132491 other upstream 200038 19222055 ~ 19222421 (+) True G105916
TU132460 other upstream 305090 19112910 ~ 19117369 (+) True AMCG00011328
TU132321 other upstream 1634409 17784163 ~ 17788050 (+) True G105778
TU132132 other upstream 2440218 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 3438380 15963340 ~ 15984079 (+) True G105373
TU132810 other downstream 667672 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 684523 20112080 ~ 20162966 (+) True G106139
TU132801 other downstream 691018 20118575 ~ 20162966 (+) False G106139
TU132823 other downstream 868454 20296011 ~ 20339087 (+) False AMCG00011365
TU132939 other downstream 933651 20361208 ~ 20367223 (+) True G106242

Expression Profile