RNA id: AMCG00011342


Basic Information

Item Value
RNA id AMCG00011342
length 1281
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00011342
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19434328 ~ 19438204 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGAAAGCAACAACTGGGAATCTGATCAGCAGGTGCAGCTCCGTGTTTTCAGTTCATGTTGAGAAGAGACTGCAGAATGGCAGTGAAAGTCCAGAGTTTTGTCGCTCCAGATTGCAGCTATTTGATCTTGCTGGTGGGGCATACAGGGAAGATGTCAATGGGGTCAGCCCCTTGTTGAAAGTCCTAGAGCAGGCTGAAGGACTGCTGCCCGTCCTGTTGACTGAGGCGCTCCGAGGAAACGGCCTGGTGGATGAGGAAACCCCCAGGGCTCTGGCACTGGCTCAGCAGCTGAGGAGGCTGAGGACCAGGGTGTCTCCCGGCCACTGGTGCCCCCAGAGGTCTGCTCACCGGCTACGGTCACTCATTTTGCAGCAGAGGAACAAGATAATCGCTCAGGAAAACAGTGGAGAACAAGAAACACGAGAGCTGGCTGAGCTCGTTAAGGCCCTGCAGGTGTATGGAGGGGAACTACAGCCAAACCAGTATCTGAGAATACAGAGCATTGTTAAAAACCAGAGCtgggagaagaagagagaaagatcaaaagagaatgaagaaaaaataaagGCTTATGCAGCCAGCAGCCCAGCCTACACTGCTCCCCAGCTGAGGGAGATGCAGGAGAGGCTCAGATACTTTCAGGAGCAACTGAAGAAGGAGATGGAGGAACACTTGAAAGATGGGAAAGTCTGTGTTGACAAGAATCAGAAGAGCGTGAGCAGGATTGAGCAGCTGAAGGAAGCCATCGCCGAGGAAGAGAGGAAGCTGAAAAATGTCATGCAGGAATCAGAGCAACTACAGCACCCCACTGGTCAGGCAAAAGATACTTTGTCCCAGGCTGCTGATGTGGAGCTGGAATATACAACAGCTCTGaacaggaggaggaggctgaAGGAACAGCACAGTGCTCTGATTCAGGAGGAACTTCTGAAGATGGAACAGGAACAAGAGACTGAGAAGGGCGAGGGGCAGGTGGCAGAGCTCTGGAGACTCGGCAGAGAGCGGGAGATCCTGGTGCTGCAGCTGGAGTCGCTGCGGAGGGAGAAGGCCGAGGCCGAGAGGGACCTGGAGGCCCAGCATCACAGACACACCCAGGAGCTGGCCACACTGCGGGCAGAAAGCCTACAGGTTTTCCGAGCTTTCCGGGAAGTGTttgaggaacagagagagaccCTAGAACAGCGCTACCGTGGCCTGCTTGTCGAGGCCATTCGGGACGCAGTATATCTCTCAGCCAAGAACCAGCAGCTGGAGGTAGAGAACAGCCAGCTCCAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132421 lncRNA upstream 817263 18616850 ~ 18617065 (+) True G105858
TU132361 lncRNA upstream 1186560 18175355 ~ 18247768 (+) True G105811
TU132340 lncRNA upstream 1401303 18032755 ~ 18033025 (+) True G105794
TU132337 lncRNA upstream 1433985 17999636 ~ 18000343 (+) True G105792
TU132318 lncRNA upstream 1666107 17765891 ~ 17768221 (+) True G105776
TU132641 lncRNA downstream 149989 19588193 ~ 19588973 (+) True G106022
TU132698 lncRNA downstream 364967 19803171 ~ 19803475 (+) True G106071
TU132775 lncRNA downstream 518801 19957005 ~ 19995987 (+) True G106134
TU132783 lncRNA downstream 540043 19978247 ~ 20014348 (+) True G106138
TU132777 lncRNA downstream 549000 19987204 ~ 19995987 (+) False G106134
AMCG00011341 mRNA upstream 6771 19422459 ~ 19427557 (+) True AMCG00011341
AMCG00011337 mRNA upstream 20047 19410611 ~ 19414281 (+) True AMCG00011337
AMCG00011340 mRNA upstream 37564 19372447 ~ 19396764 (+) True AMCG00011340
AMCG00011338 mRNA upstream 120963 19311307 ~ 19313365 (+) True AMCG00011338
AMCG00011344 mRNA upstream 145133 19286626 ~ 19289195 (+) True AMCG00011344
AMCG00011339 mRNA downstream 12811 19451015 ~ 19475876 (+) True AMCG00011339
AMCG00011346 mRNA downstream 42534 19480738 ~ 19484146 (+) True AMCG00011346
AMCG00011347 mRNA downstream 47455 19485659 ~ 19499205 (+) True AMCG00011347
AMCG00011351 mRNA downstream 163161 19601365 ~ 19609025 (+) True AMCG00011351
AMCG00011352 mRNA downstream 181778 19619982 ~ 19629426 (+) True AMCG00011352
TU132491 other upstream 211907 19222055 ~ 19222421 (+) True G105916
TU132460 other upstream 316959 19112910 ~ 19117369 (+) True AMCG00011328
TU132321 other upstream 1646278 17784163 ~ 17788050 (+) True G105778
TU132132 other upstream 2452087 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 3450249 15963340 ~ 15984079 (+) True G105373
TU132810 other downstream 657025 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 673876 20112080 ~ 20162966 (+) True G106139
TU132801 other downstream 680371 20118575 ~ 20162966 (+) False G106139
TU132823 other downstream 857807 20296011 ~ 20339087 (+) False AMCG00011365
TU132939 other downstream 923004 20361208 ~ 20367223 (+) True G106242

Expression Profile